Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0518 ATGCCAGCCGGAATGATGATTCCAGCGAGAAACACGGCGTCGTCGATGATCGGAAGGAACGGAAGTGTTGGGATGTTTGGGTCTCCAGGCAGCCTTGTTCTTGGACAGGAAATACAAGGAGTGGAAATGGGAGAAAATGAATATGGGAGAATGAGAGAAACAGAAGAATTTGAGAGTGGAACAAAATCAAGTAGCGAGAACCACGAGGTTGGTTCCGGTGACGACCAACTCAACCAACGCCCCAAAAAGAAGCGTTACCACCGCCACACTCAGCATCAGATCCAACAAATGGAAGCGTTCTTCAAGGAATGTCCTCACCCAGATGACAAGCAAAGGAAGGAGCTGAGTAGGGAATTGAATTTAGAGCCATTGCAAGTGAAGTTTTGGTTTCAAAACAAGCGAACTCAGATGAAGACCCATCATGAGCGACATGAAAACACCCAGCTCCGAACAGAAAATGAGAAGCTTAGAGCAGATAATATGAGATATAGAGAAGCTCTTAGTAATGCCACGTGTCCCAATTGTGGAGGTCCGACCGCCATTGGAGAGATGTCCTTTGACGAACATCATCTCCGGCTTGAAAATGCCCGCTTGAGAGAAGAGATCGATCGCATTTCAGCCATAGCAGCAAAATACGTTGGAAAGCCAGTATCAAACTACCCTCTTCTTTCTACACCAATTCCTTCACGTCCTCTAGAACTTGGAATGGGAGGCTATGTAGGCCACGATTCCGGCGGGGACATGTACGGGGCCCCATCGGAAGCCGACAAGCCGATAATTATCGAGCTTGCAGTTGCAGCCATGGAGGAGCTGGTCCGAATGGCTCAGATGGGTGAGCCTTTGTGGATGACAGGGCTTGATGGCTCAACTGCTGTGCTTAATGAAGAGGAATATGTTAGAAGCTTTCCTAGAGGAATTGGTCCTAAGCCCTCTGGGTTCAGTTGTGAAGCTTCCCGTGCTACTGCTGTTGTCATTATGAATCATATTAGCCTCGTTGAGATGCTCATGGATGTGAATCAATGGTCAACAATATTCAGTGGGATTGTGTCGAGAGCTATGACATTAGAAGTATTATCAACCGGCGTTGCTGGAAACTACAACGGAGCATTACAAGTGATGACATCCGAATTACAAGTGCCTTCACCCCTTGTTCCAACTCGGGAGAGCTATTTCGTGAGGTATTGTAAACAACATGGTGAGGGAACATGGGCTGTGGTGGACGTTTCCTTAGACAATTTACGCCCAGCTCCTGCCCTTAGATGTAGAAGAAGGCCATCCGGCTGCTTAATCCAAGAAATGCCCAATGGCTATTCTAAGGTTACCTGGGTTGAGCATGTTGAGGTGGATGATCGTGGGGTCCACAGTTTATACAACCAGCTAGTTAGCTCCGGCCACGCGTTCGGCGCGAGGCGTTGGATTGCCACGTTGGATCGTCAATGTGAACGGCTTGCCAGTGCCATGGCCACAAGTATTCCTACTGGTGATGCTGGAGTGATAACAAATCAAGAAGGAAGAAAAAGCATGTTGAAGCTGGCGGAGAGAATGGTGATGAGCTTTTGCGGTGGAGTGAGCGCGTCAACCACACACACTTGGACGACTCTATCGGGAACTGGAGCTGACGACGTTAGAGTTATGACAAGAAAGAGTGTTGACGATCCCGGCAGACCTCCCGGCATTGTCCTCAGCGCCGCCACTTCCTTTTGGCTTCCTCTTCCTCCCGACAGAGTCTTCCATTTTCTCAGAGATGAAAATTCTCGTAATGAGTGGGATATTCTTTCAAATGGTGGAGTTGTTCAAGAAATGGCTCACATTGCCAATGGCCGGGACACGGGCAACTGTGTTTCTTTGCTACGAGTTAACAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAAAGCAGCACAGATCAAACAGCCTCGTTTGTAATCTACGCGCCGGTGGACATTGTGTCCATCAACGTCGTACTAAACGGCGGAGATCCTGATTACGTGGCCCTTCTCCCCTCCGGATTCGCCATTCTTCCCGATGGAACCACTGGGTCCAGCGGCGGCGCTGCCAATGGGGTGGCTGAACATGGGTCCGCCGGGTCGCTTTTAACGGTGGCGTTTCAGATTTTGGTTGACTCGCCTCTTTGTCATGTGATAATCCTTGAACCCCTCACTCTCACCTCAGAAGGAGAAAAATGA 2193 48.93 MPAGMMIPARNTASSMIGRNGSVGMFGSPGSLVLGQEIQGVEMGENEYGRMRETEEFESGTKSSSENHEVGSGDDQLNQRPKKKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMKTHHERHENTQLRTENEKLRADNMRYREALSNATCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVSNYPLLSTPIPSRPLELGMGGYVGHDSGGDMYGAPSEADKPIIIELAVAAMEELVRMAQMGEPLWMTGLDGSTAVLNEEEYVRSFPRGIGPKPSGFSCEASRATAVVIMNHISLVEMLMDVNQWSTIFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPAPALRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHSLYNQLVSSGHAFGARRWIATLDRQCERLASAMATSIPTGDAGVITNQEGRKSMLKLAERMVMSFCGGVSASTTHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPLPPDRVFHFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESSTDQTASFVIYAPVDIVSINVVLNGGDPDYVALLPSGFAILPDGTTGSSGGAANGVAEHGSAGSLLTVAFQILVDSPLCHVIILEPLTLTSEGEK 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2255819 2262694 - CrPI670011_02g005180.1 Cre02g0518 489799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0518 730 SUPERFAMILY Homeodomain-like 67 139 IPR009057 -
Cre02g0518 730 MobiDBLite consensus disorder prediction 53 90 - -
Cre02g0518 730 CDD homeodomain 83 141 IPR001356 GO:0003677(InterPro)
Cre02g0518 730 SUPERFAMILY Bet v1-like 501 707 - -
Cre02g0518 730 Pfam START domain 263 482 IPR002913 GO:0008289(InterPro)
Cre02g0518 730 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 66 711 IPR042160 -
Cre02g0518 730 CDD START_ArGLABRA2_like 257 481 - -
Cre02g0518 730 FunFam Homeobox-leucine zipper protein GLABRA 2 262 481 - -
Cre02g0518 730 Coils Coil 146 166 - -
Cre02g0518 730 SMART START_1 262 482 IPR002913 GO:0008289(InterPro)
Cre02g0518 730 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre02g0518 730 FunFam Homeobox-leucine zipper protein HDG1 70 156 - -
Cre02g0518 730 Gene3D - 68 157 - -
Cre02g0518 730 ProSiteProfiles START domain profile. 253 485 IPR002913 GO:0008289(InterPro)
Cre02g0518 730 Pfam Homeodomain 83 138 IPR001356 GO:0003677(InterPro)
Cre02g0518 730 SMART HOX_1 81 144 IPR001356 GO:0003677(InterPro)
Cre02g0518 730 Gene3D - 297 477 IPR023393 -
Cre02g0518 730 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677(InterPro)
Cre02g0518 730 SUPERFAMILY Bet v1-like 255 484 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0518 Cre-Chr2:2255819 Cre06g0780 Cre-Chr6:1186091 1.90E-207 dispersed
Cre02g0518 Cre-Chr2:2255819 Cre02g1186 Cre-Chr2:11293138 0.00E+00 wgd
Cre02g0518 Cre-Chr2:2255819 Cre03g0778 Cre-Chr3:6601693 5.30E-242 wgd
Cre02g0518 Cre-Chr2:2255819 Cre04g1828 Cre-Chr4:36064537 5.30E-250 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53083 PF01852 START 1.20E-57 CL0209 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0518 K09338 - csv:101219415 1337.01