Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0538 ATGGACGCCGCCGCACCTTCCCCTTCCCCTCCTCTGCCTACTCCCACTCCCCTGCAATTTCCGGTTAACCTCAATTCCACCCTCCCCGATCCCCACGATTCTCCTCCTCCTCCGCCTCCTCCTCCCCCTCCGCCACCCCCTCCTCCTCCACCCTCCTCCTCCCACCGCCCCTTCTTCGACGAAATGAACTTCTTCCCCGCCGATGATAAATCCCGCGTCCTTCTCTCTGCCTCTCACTCCAATCTCACTCCCACCAAACTCGACTTCAATGTTAACACGGGGTTGAATCTCTTGACCACGAATTCGTGTAGCGATCAATCCATGGTGGACGATGGAGTTTCACCAAACCCAGAAGAAAAAAGGATAAAAAACGAGAGAGCAGTTCTTCAAGCTGAATTGGAGAGAATAAACTCGGAGAATCTACGATTAAAAGACATGTTAAATCAAGTGACGAGCAATTACCAAACACTGCAGATGCAATTCAACACGCTAATTCAAACCCAGAAAACAGGGGACGCCGGTGATCCGATTGAGGAAAACGCCGGCAGTGGCGGAGGGAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATATTGGTAATAAGCTGGTGCCCAGGCAATTTATGGATCTTGGATTAGCAACCAATATGGAGAACGATGAGCCGTCAATGTCGTCGTCGGAAGGGAGGAGTGGGGAGCGGTCCCGGTCGCCGGGAACCACCGGAGAAGTAGCGTCGTCGAAACGGCATAGCCCAGATCAATCTTCCAATTGGGGTTCCAATAATAACAACAACAACAACAATAATAAAGTTCCAAAATTCAGTTCTTCTTCGGGTAAAGATGTGGATCAAACTGAAGCTACCATGAGGAAGGCTAGAGTCTCCGTTCGAGCCAGATCAGAAGCCCCCATGATAACAGATGGATGTCAATGGAGAAAATATGGACAAAAAATGGCGAAGGGAAACCCTTGTCCACGAGCTTATTACCGGTGCACCATGGCCGCCGGCTGCCCAGTTAGAAAACAAGTACAAAGATGTGCAGAAGACAAAACAATTTTGATAACAACCTACGAAGGAAACCACAACCACCCATTGCCGCCGGCCGCCATGGCAATGGCTTCCACAACTTCATCGGCGGCCAGAATGCTTCTCTCAGGATCCATGTCAAGTGCAGATGGTTTAATGAACTCTAATTTTTTAGCAAGAACCCTATTGCCATGTTCTTCAAGCATGGCTACGATCTCAGCCTCAGCCCCATTTCCCACGGTCACATTGGACCTAACTCAAAACCCCAATCCTTTGTTCCAACGCCCGGCCGCGGGTCACTTCCCGATCCCATTTGCGGCCGGTCCGCCACAAAGCTTCCCACAGATCTTCGGACATGCATTATACAATCAATCAAAATTCTCAGGCCTTCAAATGTCAAAGGATATTGAAGCACCACCACCTCCACCACCGCAGAATCCATTGGCCGACACGTTGAGTGCGGCGGGTGTAGCAATCGCATCCGACCCGAATTTCATTGCGGCATTGGCAACGGCAATGACGTCGCTGATCGGTGGATCGCATCATCAGAATGAGAATGGTAATGGCGGTAGTAATGTTGATAACAATACAAATAGCAACTCCCAACAGTAA 1650 48.73 MDAAAPSPSPPLPTPTPLQFPVNLNSTLPDPHDSPPPPPPPPPPPPPPPPPSSSHRPFFDEMNFFPADDKSRVLLSASHSNLTPTKLDFNVNTGLNLLTTNSCSDQSMVDDGVSPNPEEKRIKNERAVLQAELERINSENLRLKDMLNQVTSNYQTLQMQFNTLIQTQKTGDAGDPIEENAGSGGGNNNNNNNNNNNNNNNNIGNKLVPRQFMDLGLATNMENDEPSMSSSEGRSGERSRSPGTTGEVASSKRHSPDQSSNWGSNNNNNNNNNKVPKFSSSSGKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNSNFLARTLLPCSSSMATISASAPFPTVTLDLTQNPNPLFQRPAAGHFPIPFAAGPPQSFPQIFGHALYNQSKFSGLQMSKDIEAPPPPPPQNPLADTLSAAGVAIASDPNFIAALATAMTSLIGGSHHQNENGNGGSNVDNNTNSNSQQ 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2506541 2509746 - CrPI670011_02g005380.1 Cre02g0538 489819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0538 549 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 109 530 IPR044810 GO:0003700(InterPro)
Cre02g0538 549 MobiDBLite consensus disorder prediction 1 58 - -
Cre02g0538 549 FunFam probable WRKY transcription factor 31 294 371 - -
Cre02g0538 549 MobiDBLite consensus disorder prediction 182 206 - -
Cre02g0538 549 SMART WRKY_cls 309 369 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g0538 549 MobiDBLite consensus disorder prediction 526 549 - -
Cre02g0538 549 Gene3D WRKY domain 294 371 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g0538 549 Pfam WRKY DNA -binding domain 311 368 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g0538 549 Coils Coil 119 153 - -
Cre02g0538 549 MobiDBLite consensus disorder prediction 221 303 - -
Cre02g0538 549 MobiDBLite consensus disorder prediction 170 206 - -
Cre02g0538 549 SUPERFAMILY Formin homology 2 domain (FH2 domain) 40 46 - -
Cre02g0538 549 ProSiteProfiles WRKY domain profile. 304 370 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g0538 549 MobiDBLite consensus disorder prediction 1 18 - -
Cre02g0538 549 MobiDBLite consensus disorder prediction 30 55 - -
Cre02g0538 549 SUPERFAMILY WRKY DNA-binding domain 302 370 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g0538 549 MobiDBLite consensus disorder prediction 222 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0538 Cre-Chr2:2506541 Cre06g2502 Cre-Chr6:32726927 4.70E-41 dispersed
Cre02g0538 Cre-Chr2:2506541 Cre04g1796 Cre-Chr4:35873961 1.00E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53085 PF03106 WRKY 2.50E-24 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0538 - - - 0.0