Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre02g0538 | ATGGACGCCGCCGCACCTTCCCCTTCCCCTCCTCTGCCTACTCCCACTCCCCTGCAATTTCCGGTTAACCTCAATTCCACCCTCCCCGATCCCCACGATTCTCCTCCTCCTCCGCCTCCTCCTCCCCCTCCGCCACCCCCTCCTCCTCCACCCTCCTCCTCCCACCGCCCCTTCTTCGACGAAATGAACTTCTTCCCCGCCGATGATAAATCCCGCGTCCTTCTCTCTGCCTCTCACTCCAATCTCACTCCCACCAAACTCGACTTCAATGTTAACACGGGGTTGAATCTCTTGACCACGAATTCGTGTAGCGATCAATCCATGGTGGACGATGGAGTTTCACCAAACCCAGAAGAAAAAAGGATAAAAAACGAGAGAGCAGTTCTTCAAGCTGAATTGGAGAGAATAAACTCGGAGAATCTACGATTAAAAGACATGTTAAATCAAGTGACGAGCAATTACCAAACACTGCAGATGCAATTCAACACGCTAATTCAAACCCAGAAAACAGGGGACGCCGGTGATCCGATTGAGGAAAACGCCGGCAGTGGCGGAGGGAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATATTGGTAATAAGCTGGTGCCCAGGCAATTTATGGATCTTGGATTAGCAACCAATATGGAGAACGATGAGCCGTCAATGTCGTCGTCGGAAGGGAGGAGTGGGGAGCGGTCCCGGTCGCCGGGAACCACCGGAGAAGTAGCGTCGTCGAAACGGCATAGCCCAGATCAATCTTCCAATTGGGGTTCCAATAATAACAACAACAACAACAATAATAAAGTTCCAAAATTCAGTTCTTCTTCGGGTAAAGATGTGGATCAAACTGAAGCTACCATGAGGAAGGCTAGAGTCTCCGTTCGAGCCAGATCAGAAGCCCCCATGATAACAGATGGATGTCAATGGAGAAAATATGGACAAAAAATGGCGAAGGGAAACCCTTGTCCACGAGCTTATTACCGGTGCACCATGGCCGCCGGCTGCCCAGTTAGAAAACAAGTACAAAGATGTGCAGAAGACAAAACAATTTTGATAACAACCTACGAAGGAAACCACAACCACCCATTGCCGCCGGCCGCCATGGCAATGGCTTCCACAACTTCATCGGCGGCCAGAATGCTTCTCTCAGGATCCATGTCAAGTGCAGATGGTTTAATGAACTCTAATTTTTTAGCAAGAACCCTATTGCCATGTTCTTCAAGCATGGCTACGATCTCAGCCTCAGCCCCATTTCCCACGGTCACATTGGACCTAACTCAAAACCCCAATCCTTTGTTCCAACGCCCGGCCGCGGGTCACTTCCCGATCCCATTTGCGGCCGGTCCGCCACAAAGCTTCCCACAGATCTTCGGACATGCATTATACAATCAATCAAAATTCTCAGGCCTTCAAATGTCAAAGGATATTGAAGCACCACCACCTCCACCACCGCAGAATCCATTGGCCGACACGTTGAGTGCGGCGGGTGTAGCAATCGCATCCGACCCGAATTTCATTGCGGCATTGGCAACGGCAATGACGTCGCTGATCGGTGGATCGCATCATCAGAATGAGAATGGTAATGGCGGTAGTAATGTTGATAACAATACAAATAGCAACTCCCAACAGTAA | 1650 | 48.73 | MDAAAPSPSPPLPTPTPLQFPVNLNSTLPDPHDSPPPPPPPPPPPPPPPPPSSSHRPFFDEMNFFPADDKSRVLLSASHSNLTPTKLDFNVNTGLNLLTTNSCSDQSMVDDGVSPNPEEKRIKNERAVLQAELERINSENLRLKDMLNQVTSNYQTLQMQFNTLIQTQKTGDAGDPIEENAGSGGGNNNNNNNNNNNNNNNNIGNKLVPRQFMDLGLATNMENDEPSMSSSEGRSGERSRSPGTTGEVASSKRHSPDQSSNWGSNNNNNNNNNKVPKFSSSSGKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNSNFLARTLLPCSSSMATISASAPFPTVTLDLTQNPNPLFQRPAAGHFPIPFAAGPPQSFPQIFGHALYNQSKFSGLQMSKDIEAPPPPPPQNPLADTLSAAGVAIASDPNFIAALATAMTSLIGGSHHQNENGNGGSNVDNNTNSNSQQ | 549 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2506541 | 2509746 | - | CrPI670011_02g005380.1 | Cre02g0538 | 489819 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre02g0538 | 549 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 109 | 530 | IPR044810 | GO:0003700(InterPro) | |
Cre02g0538 | 549 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Cre02g0538 | 549 | FunFam | probable WRKY transcription factor 31 | 294 | 371 | - | - | |
Cre02g0538 | 549 | MobiDBLite | consensus disorder prediction | 182 | 206 | - | - | |
Cre02g0538 | 549 | SMART | WRKY_cls | 309 | 369 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre02g0538 | 549 | MobiDBLite | consensus disorder prediction | 526 | 549 | - | - | |
Cre02g0538 | 549 | Gene3D | WRKY domain | 294 | 371 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre02g0538 | 549 | Pfam | WRKY DNA -binding domain | 311 | 368 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre02g0538 | 549 | Coils | Coil | 119 | 153 | - | - | |
Cre02g0538 | 549 | MobiDBLite | consensus disorder prediction | 221 | 303 | - | - | |
Cre02g0538 | 549 | MobiDBLite | consensus disorder prediction | 170 | 206 | - | - | |
Cre02g0538 | 549 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 40 | 46 | - | - | |
Cre02g0538 | 549 | ProSiteProfiles | WRKY domain profile. | 304 | 370 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre02g0538 | 549 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cre02g0538 | 549 | MobiDBLite | consensus disorder prediction | 30 | 55 | - | - | |
Cre02g0538 | 549 | SUPERFAMILY | WRKY DNA-binding domain | 302 | 370 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre02g0538 | 549 | MobiDBLite | consensus disorder prediction | 222 | 287 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g0538 | Cre-Chr2:2506541 | Cre06g2502 | Cre-Chr6:32726927 | 4.70E-41 | dispersed | |
Cre02g0538 | Cre-Chr2:2506541 | Cre04g1796 | Cre-Chr4:35873961 | 1.00E-112 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53085 | PF03106 | WRKY | 2.50E-24 | CL0274 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre02g0538 | - | - | - | 0.0 |