Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0547 ATGAGCCCTCGATTTGGGTTTTTGTTGTTGTTTTTGTTCTCTGTTTTGCTGGGAGCTGATTCAAAGTGCCCTAGAACATGCGATGTAGCTTTAGGTTCGTACTTTGTGTGGGAGGGTAGTACTTTGTCTCTCATCTCTCAAATGTTTCGGTTGCCGTCTCCTGATATAATCGTCAGCTACAATAGAGATAAAATTCCCAACAAAGACAGTGTTAATAGCGGCATCAGAATCAACGTTCCATTCTCCTGTGACTGTATTAGCGATACGTTTCTGGGTCATACGTTTCAGTACCAGATTAATAGTGGAGATACTTACAGTGAAATTGCGACCAAATTCTATTCGAACCTGACTACGGTGGACATGTTACAAAAATTCAATAATTTTGATGTTCTTAATCTTCCTCCAAATGGTATTTTGAATGTGGTAGTGAACTGCTCCTGTGGGAATCCCGATGTTTCCAAGACATATGGGCTGTTTGTCACTTACCCAATTCGATCCGATGATAGTTGGGATAAGTTGCAAACAGATACAAATGTCAGCTTGTCTTTGCTGCAGCAGTACAATCAGGGTGTGAATTTCAGCCCAGGGAATTTGATCTTTATTCCAGGCAGAGATAAAAGTGGCAACTATCCACCTCTGAATATAAGCACAGGTGCTGTGGCTTTCTTAGATGGACTTGAAATGATTATCATGAGCTTGACGGAAGAAAGCATGTCTGAGTTATTAGAATTGGAATGTGGAGCCATTGCAGGCATAATTATCGGCGCAGTACTTGGGGTTCTACTTGTAGCAGGTGTCGTTTACATTGTCATTCGAAGGAGAAAGTCGAAAAGTTCTAAATTGCTGGCGTTCTCCCAAGAACTGTCTTCTCAAGACGGGCGCGCTCTTGCCCCTGGAAGTTCGTTAGATAAATCTACTGAATCAAATGGTCAAGGTGGTGGTATAGCTGCCGTTACCGGTATTACTGTGGACAAATCAGTGGATTTCTCATATGAAGAACTTGCCAAGGCCACGGACAACTTTAGCTTGGCTAACAAAATCGGTGAAGGTGGTTTCGGATCGGTTTACTACGCAGAACTCAGAGGAGAGAAAGCTGCAATAAAGAAGATGGACATGCAAGCTTCAAGGGAGTTCCTTGCAGAAATTAAGGTTCTAACACGCGTTCACCACTTGAACTTGGTGCGCTTGATAGGATATTGTGTTGAGAATTCTCTATTCCTAGTCTATGAGTACATTGAGAATGGCAACTTGAGCCAACATTTACGTGGCACTGGTCGGGATCCATTGCCGTGGCCTTCTAGGGTCCAAATAGCCCTCGATTCAGCTCGTGGCCTTGAGTATATCCATGAGCACACTGTTCCCGTTTATATTCATCGTGATATTAAATCCGCCAACATATTGATTGACAAAAATTTTCATGGAAAGGTTGCAGACTTTGGGCTAACCAAGTTAACTGAAGTTGGAAATTCTTCGCTTCCTACTCGTCTTGTTGGCACATTTGGATATATGCCACCCGAATATGCACAGTACGGTGATGTTTCTCCAAAGATCGATGTATATGCTTTTGGTGTTGTTCTTTATGAGCTTATTTCAGCCAAGGAAGCTGTGGTTAAGACGAACAAAACCAGTGCAATCAATGAATCAAAAGGCCTTGTCGCTTTGTTTGAAGATGTCCTGAATCAACCCGACGCAAAAGAGAACCTTCACAAACTAGTCGACCCAAGACTCGAAGAGAACTACCCTCTCGATTCGGTTTTCAAGATGGCTCAACTTGCCAAGGCATGTACACATGAGAATCCACAGCTACGGCCAAGCATGAGATCCATTGTGGTTGCTCTCATGACACTTTCTTCTGCAACAGAGGATTGGGACGTCGGCTCTTTCTATGAAAACCAAGCTCTCGTCAACTTGATGTCGGGAAGGTAG 1926 43.2 MSPRFGFLLLFLFSVLLGADSKCPRTCDVALGSYFVWEGSTLSLISQMFRLPSPDIIVSYNRDKIPNKDSVNSGIRINVPFSCDCISDTFLGHTFQYQINSGDTYSEIATKFYSNLTTVDMLQKFNNFDVLNLPPNGILNVVVNCSCGNPDVSKTYGLFVTYPIRSDDSWDKLQTDTNVSLSLLQQYNQGVNFSPGNLIFIPGRDKSGNYPPLNISTGAVAFLDGLEMIIMSLTEESMSELLELECGAIAGIIIGAVLGVLLVAGVVYIVIRRRKSKSSKLLAFSQELSSQDGRALAPGSSLDKSTESNGQGGGIAAVTGITVDKSVDFSYEELAKATDNFSLANKIGEGGFGSVYYAELRGEKAAIKKMDMQASREFLAEIKVLTRVHHLNLVRLIGYCVENSLFLVYEYIENGNLSQHLRGTGRDPLPWPSRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFHGKVADFGLTKLTEVGNSSLPTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKEAVVKTNKTSAINESKGLVALFEDVLNQPDAKENLHKLVDPRLEENYPLDSVFKMAQLAKACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVNLMSGR 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2571349 2575686 - CrPI670011_02g005470.1 Cre02g0547 489828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0547 641 Pfam Protein kinase domain 343 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g0547 641 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524(InterPro)
Cre02g0547 641 Pfam LysM domain 97 136 IPR018392 -
Cre02g0547 641 CDD STKc_IRAK 347 610 - -
Cre02g0547 641 FunFam LysM receptor kinase 2 320 411 - -
Cre02g0547 641 Gene3D Phosphorylase Kinase; domain 1 327 411 - -
Cre02g0547 641 Gene3D Transferase(Phosphotransferase) domain 1 412 632 - -
Cre02g0547 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g0547 641 ProSiteProfiles Protein kinase domain profile. 341 616 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g0547 641 FunFam PTI1-like tyrosine-protein kinase 3 412 627 - -
Cre02g0547 641 SMART serkin_6 341 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g0547 641 SUPERFAMILY Protein kinase-like (PK-like) 325 613 IPR011009 -
Cre02g0547 641 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 9 640 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0547 Cre-Chr2:2571349 Cre07g1694 Cre-Chr7:32374771 3.90E-79 dispersed
Cre02g0547 Cre-Chr2:2571349 Cre11g1014 Cre-Chr11:7454804 9.90E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63848 PF00069 Pkinase 2.70E-46 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0547 K13429 - csv:101203576 1071.23