Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0555 ATGAACGAGGTTGTTCCATTTCATCGGGAAGCTAAAATTATGGCTCATCCTCTCTTCCCTCGCCTCCTCGCTGCCTACGTCAACTGCCAAAAGGTGGGTGCGCCGCCGGAAGTGGTGGCGAGGCTAGAGCAGGCGTGTGCCGTGGCGACGGGAAGCTGTAGGGCGGCGGGACGTGGGGATGATCCAGCGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGACCAAATATGAACAAGAGTTGACCAAACCTTTTAAAGAAGCAATGCTTTTCTTCTCAAGAATTGAGTCTCAGCTCAAAACCCTAGCAGTTTCTTCTGATGGTTTTGAGTTGGTTGGGCAAAACGAGTGCTCGAAGGAGATTGAGGTGGATATGAACGAAAACTACATAGACCCTCAAGCCGAAGAGAAGGAACTCAAAGGCCAACTTCTACGCAAATACAGCGGATATCTTGGGAGCCTAAAACAAGAGTTTTTGAAGAAGAAAAAGAATGGGAAGTTGCCAAAAGAAGCTAGACAACAATTGCTCGACTGGTGGAGTCGACACTACAAATGGCCATATCCCTCGGAGTCGCAAAAGGTGGCGTTGGCGGAGTCGACGGGGCTAGACTTGAAGCAGATCAATAATTGGTTTATTAACCAAAGAAAGCGCCATTGGAAGCCATCAGAGGATATGCAGTTTGTGGTGATGGATGCTGCTCATCCACATTACTATTTGGACAATGTCATATGCAATCCTTTCTCTATGGACTGTTCTTCTACCCTTTTCTGA 774 47.42 MNEVVPFHREAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGRGDDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKTLAVSSDGFELVGQNECSKEIEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNPFSMDCSSTLF 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2630237 2634383 - CrPI670011_02g005550.1 Cre02g0555 489836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0555 257 SUPERFAMILY Homeodomain-like 161 236 IPR009057 -
Cre02g0555 257 SMART KNOX2_2 54 105 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre02g0555 257 Pfam KNOX1 domain 11 47 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre02g0555 257 SMART KNOX1_2 11 51 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre02g0555 257 SMART HOX_1 161 226 IPR001356 GO:0003677(InterPro)
Cre02g0555 257 FunFam Homeobox protein knotted-1-like 2 164 226 - -
Cre02g0555 257 Pfam ELK domain 139 160 IPR005539 GO:0003677(InterPro)
Cre02g0555 257 Pfam KNOX2 domain 59 103 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre02g0555 257 ProSitePatterns 'Homeobox' domain signature. 197 220 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre02g0555 257 Pfam Homeobox KN domain 179 218 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre02g0555 257 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 26 229 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre02g0555 257 ProSiteProfiles ELK domain profile. 139 159 IPR005539 GO:0003677(InterPro)
Cre02g0555 257 ProSiteProfiles 'Homeobox' domain profile. 159 222 IPR001356 GO:0003677(InterPro)
Cre02g0555 257 CDD homeodomain 171 223 IPR001356 GO:0003677(InterPro)
Cre02g0555 257 SMART ELK_2 139 160 IPR005539 GO:0003677(InterPro)
Cre02g0555 257 Gene3D - 164 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0555 Cre-Chr2:2630237 Cre05g1932 Cre-Chr5:31489712 1.60E-71 dispersed
Cre02g0555 Cre-Chr2:2630237 Cre04g1788 Cre-Chr4:35812840 1.20E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53088 PF03791 KNOX2 4.00E-22 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0555 - - - 0.0