Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0556 ATGGCACAGTTGCCACCCAAAATCCCAAATATGACGCCTAATTGGCCTGAATTTTCCCGGCAGAAAATCCCTTCAATGGAAACCTTTGCACCGCCCACCACCACGCCGGCGGTTACTCAAAACAATCCTTCTTGGGTCGATGAATTTCTCGATTTTTCTTCTGCTAGACGTGGATCCCACCGTCGGTCTGTTAGTGATTCCATCACATTCCTCGAAATGCCAATGCTCGAGGAACATTGCCGGACTGCCGCTGCTGCACCGCCCCCGCCGCCCCCGGGATCCGGTGACCGGAATGAATTTGACAGATTCGATGACGAGCAATTCCTGTCGATGTTTAATGATGAAATCTCCGCCGCCGTCGCTCCCACCTTGTCGTCGTCGAACCCCTCCACGCCGTCGGATCATAATAGTATTAACGACGAGAAAGACGCCCAAAACGACGGTAAGCAAAATCAGAACAAAAACGAAACCGACGAAGTACAGAGCCAACAGCAATCGGAAAACCAAACACAATCCAATTCCATGGCGACGGCGGCAACGGCGGCTTCCACTGATCGGATAACAGACCCCAAAAGAGTCAAAAGAATTCTGGCAAATCGGCAATCGGCACAAAGATCACGAGTAAGGAAGCTTCAATACATATCAGAACTCGAACGAAGCGTTACATCGTTACAGGCTGAAGTATCGGTGCTATCGCCGCGAGTGGCGTTTTTGGACCACCAGAGATTGCTTCTTAACGTCGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTTGCACAGGATAAGATTTTTAAAGATGCTCATCAAGAGGCATTAAAAAGGGAGATAGAGAGACTAAGACAAGTATATCACCAACAAAACATTAAGAAGATGGAAAACAATGCAGCACCATCACCGGCGATTACTCCGTCCCAACCCGTCACCGCCATCGCCACGGATGCCAAACTTCCTAACATAGATCAAAACGAGCAAGTTCCCAACATCGTCGTTTAG 996 49.3 MAQLPPKIPNMTPNWPEFSRQKIPSMETFAPPTTTPAVTQNNPSWVDEFLDFSSARRGSHRRSVSDSITFLEMPMLEEHCRTAAAAPPPPPPGSGDRNEFDRFDDEQFLSMFNDEISAAVAPTLSSSNPSTPSDHNSINDEKDAQNDGKQNQNKNETDEVQSQQQSENQTQSNSMATAATAASTDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKKMENNAAPSPAITPSQPVTAIATDAKLPNIDQNEQVPNIVV 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2661967 2665052 - CrPI670011_02g005560.1 Cre02g0556 489837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0556 331 Gene3D - 190 261 - -
Cre02g0556 331 SMART brlzneu 187 251 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g0556 331 SUPERFAMILY Leucine zipper domain 191 245 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g0556 331 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 189 241 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g0556 331 Coils Coil 139 159 - -
Cre02g0556 331 Pfam Basic region leucine zipper 188 236 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g0556 331 Coils Coil 270 290 - -
Cre02g0556 331 CDD bZIP_plant_RF2 192 242 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g0556 331 MobiDBLite consensus disorder prediction 122 193 - -
Cre02g0556 331 MobiDBLite consensus disorder prediction 136 154 - -
Cre02g0556 331 MobiDBLite consensus disorder prediction 82 101 - -
Cre02g0556 331 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 194 209 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g0556 331 MobiDBLite consensus disorder prediction 155 184 - -
Cre02g0556 331 FunFam Basic leucine zipper 61 190 263 - -
Cre02g0556 331 PANTHER BASIC LEUCINE ZIPPER 34 1 306 IPR052483 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0556 Cre-Chr2:2661967 Cre09g0925 Cre-Chr9:9354657 4.40E-10 dispersed
Cre11g2174 Cre-Chr11:33454382 Cre02g0556 Cre-Chr2:2661967 4.10E-53 transposed
Cre02g0556 Cre-Chr2:2661967 Cre02g1236 Cre-Chr2:12535113 1.70E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53089 PF07716 bZIP_2 4.10E-09 CL0018 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0556 - - - 0.0