Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre02g0556 | ATGGCACAGTTGCCACCCAAAATCCCAAATATGACGCCTAATTGGCCTGAATTTTCCCGGCAGAAAATCCCTTCAATGGAAACCTTTGCACCGCCCACCACCACGCCGGCGGTTACTCAAAACAATCCTTCTTGGGTCGATGAATTTCTCGATTTTTCTTCTGCTAGACGTGGATCCCACCGTCGGTCTGTTAGTGATTCCATCACATTCCTCGAAATGCCAATGCTCGAGGAACATTGCCGGACTGCCGCTGCTGCACCGCCCCCGCCGCCCCCGGGATCCGGTGACCGGAATGAATTTGACAGATTCGATGACGAGCAATTCCTGTCGATGTTTAATGATGAAATCTCCGCCGCCGTCGCTCCCACCTTGTCGTCGTCGAACCCCTCCACGCCGTCGGATCATAATAGTATTAACGACGAGAAAGACGCCCAAAACGACGGTAAGCAAAATCAGAACAAAAACGAAACCGACGAAGTACAGAGCCAACAGCAATCGGAAAACCAAACACAATCCAATTCCATGGCGACGGCGGCAACGGCGGCTTCCACTGATCGGATAACAGACCCCAAAAGAGTCAAAAGAATTCTGGCAAATCGGCAATCGGCACAAAGATCACGAGTAAGGAAGCTTCAATACATATCAGAACTCGAACGAAGCGTTACATCGTTACAGGCTGAAGTATCGGTGCTATCGCCGCGAGTGGCGTTTTTGGACCACCAGAGATTGCTTCTTAACGTCGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTTGCACAGGATAAGATTTTTAAAGATGCTCATCAAGAGGCATTAAAAAGGGAGATAGAGAGACTAAGACAAGTATATCACCAACAAAACATTAAGAAGATGGAAAACAATGCAGCACCATCACCGGCGATTACTCCGTCCCAACCCGTCACCGCCATCGCCACGGATGCCAAACTTCCTAACATAGATCAAAACGAGCAAGTTCCCAACATCGTCGTTTAG | 996 | 49.3 | MAQLPPKIPNMTPNWPEFSRQKIPSMETFAPPTTTPAVTQNNPSWVDEFLDFSSARRGSHRRSVSDSITFLEMPMLEEHCRTAAAAPPPPPPGSGDRNEFDRFDDEQFLSMFNDEISAAVAPTLSSSNPSTPSDHNSINDEKDAQNDGKQNQNKNETDEVQSQQQSENQTQSNSMATAATAASTDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKKMENNAAPSPAITPSQPVTAIATDAKLPNIDQNEQVPNIVV | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2661967 | 2665052 | - | CrPI670011_02g005560.1 | Cre02g0556 | 489837 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre02g0556 | 331 | Gene3D | - | 190 | 261 | - | - | |
Cre02g0556 | 331 | SMART | brlzneu | 187 | 251 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g0556 | 331 | SUPERFAMILY | Leucine zipper domain | 191 | 245 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g0556 | 331 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 189 | 241 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g0556 | 331 | Coils | Coil | 139 | 159 | - | - | |
Cre02g0556 | 331 | Pfam | Basic region leucine zipper | 188 | 236 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g0556 | 331 | Coils | Coil | 270 | 290 | - | - | |
Cre02g0556 | 331 | CDD | bZIP_plant_RF2 | 192 | 242 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g0556 | 331 | MobiDBLite | consensus disorder prediction | 122 | 193 | - | - | |
Cre02g0556 | 331 | MobiDBLite | consensus disorder prediction | 136 | 154 | - | - | |
Cre02g0556 | 331 | MobiDBLite | consensus disorder prediction | 82 | 101 | - | - | |
Cre02g0556 | 331 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 194 | 209 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g0556 | 331 | MobiDBLite | consensus disorder prediction | 155 | 184 | - | - | |
Cre02g0556 | 331 | FunFam | Basic leucine zipper 61 | 190 | 263 | - | - | |
Cre02g0556 | 331 | PANTHER | BASIC LEUCINE ZIPPER 34 | 1 | 306 | IPR052483 | GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g0556 | Cre-Chr2:2661967 | Cre09g0925 | Cre-Chr9:9354657 | 4.40E-10 | dispersed | |
Cre11g2174 | Cre-Chr11:33454382 | Cre02g0556 | Cre-Chr2:2661967 | 4.10E-53 | transposed | |
Cre02g0556 | Cre-Chr2:2661967 | Cre02g1236 | Cre-Chr2:12535113 | 1.70E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53089 | PF07716 | bZIP_2 | 4.10E-09 | CL0018 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre02g0556 | - | - | - | 0.0 |