Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0571 ATGTCTGAAGAGCAAGCAATTTCAAATGCCTTCATTTGCAGCATCCCATCACTTGGATCCATCAACAACCCTTCTGTTGTCAAGAAGAAGAGGAATCTCCCAGGAAATCCAGATCCCGAAGCGGAAGTTGTGTCGTTGTCACCTAAGACGCTAATGGCGACGAACCGATTCTTGTGTGAGATATGTGGTAAGGGTTTTCAAAGGGATCAAAACCTACAACTGCATAGGAGAGGGCACAATCTTCCATGGAAGCTAAAGCAAAGAAGCAATGGAAACAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAGAGTTGTGTACATCACCATCCTTCAAGGGCTCTTGGAGATCTCACAGGAATTAAAAAGCACTTTTGCAGGAAGCATGGGGAGAAGAAGTGGAAGTGTGAGAAATGCTCAAAGAAATATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAAACTTGTGGTACCAAAGAGTATAAATGTGACTGTGGGACTCCATTTTCAAGGAGAGATAGCTATGTAACTCACAGAGCATATTGTGTAGCATTAGCAGAAGAAACAGCAAGATTAAATGCAGCATCAACCATGGCCAACAACAGCAACAATTCAATGGCTGATAGTTACAACAACTACCATTTCCTAAAGCCCACAAACAACAACAATCCTCCACAATTCTTCCCTTCCTCCAACTTTTTCAAACCAGATGAAACTTCCCATATGTTCCTCAATAACATTAATAATGTTACTCCCACAATAGGACTCCCCTTTTGGATGGCTACAAATTCTCACCAAATCAATTTCCCTCACTCACTACTTCCTCAACAAACAACAACAACAACAACAACAAATTCTGATGTTCTTTCTGTTCCTTCCTTATACAGCAATGAAGAACAACAATCATCCCATCAATTTATGGCTTCATCAGCCAACATGTCAGCTACTGTTTTGCTGCAAAAGGCTGCACAAATTGGAGTGACAACCTCCACAACAGACCCATCATTGATGGAAAGTTTTGGGTTGAAATTCAGTACAATAACTGATGGGAAAGCCTTGTTTTCAGGGCTTTATGGCTCAATAATGAACTCAAACTCCAACATTATTCCTAGTTGTTGTAGCCTTGAAAATGGTGGAGATCATCATCAGGACTCTGAAATATACTCTGCACCAGCAAAGAGAATGAGACACACTGTTAGTGAAGAGAGTGTTACTGGTGGAGAAGGAGAAACAAGGGATTTCTTGGGTGTGGGAATGCACTCCATATGCCATCCATCACCAGTAAATGGATGGATCTGA 1302 41.55 MSEEQAISNAFICSIPSLGSINNPSVVKKKRNLPGNPDPEAEVVSLSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNGNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCVALAEETARLNAASTMANNSNNSMADSYNNYHFLKPTNNNNPPQFFPSSNFFKPDETSHMFLNNINNVTPTIGLPFWMATNSHQINFPHSLLPQQTTTTTTTNSDVLSVPSLYSNEEQQSSHQFMASSANMSATVLLQKAAQIGVTTSTTDPSLMESFGLKFSTITDGKALFSGLYGSIMNSNSNIIPSCCSLENGGDHHQDSEIYSAPAKRMRHTVSEESVTGGEGETRDFLGVGMHSICHPSPVNGWI 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2777064 2780027 + CrPI670011_02g005710.1 Cre02g0571 489852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0571 433 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 161 200 - -
Cre02g0571 433 FunFam protein indeterminate-domain 12-like 36 106 - -
Cre02g0571 433 Gene3D Classic Zinc Finger 53 80 - -
Cre02g0571 433 Gene3D Classic Zinc Finger 91 183 - -
Cre02g0571 433 FunFam protein indeterminate-domain 5, chloroplastic-like 113 192 - -
Cre02g0571 433 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 422 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre02g0571 433 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cre02g0571 433 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Cre02g0571 433 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cre02g0571 433 SUPERFAMILY beta-beta-alpha zinc fingers 56 155 IPR036236 -
Cre02g0571 433 SMART c2h2final6 57 79 IPR013087 -
Cre02g0571 433 SMART c2h2final6 135 155 IPR013087 -
Cre02g0571 433 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 96 130 - -
Cre02g0571 433 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 134 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0571 Cre-Chr2:2777064 Cre03g1971 Cre-Chr3:36732042 4.20E-85 dispersed
Cre02g0571 Cre-Chr2:2777064 Cre02g1304 Cre-Chr2:15680288 1.90E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53090 PF00096 zf-C2H2 0.014 CL0361 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0571 K25870 - csv:101207997 650.203