Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0572 ATGCCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTTCTCCATTGGTTTGTTCCCTCAATCAAGAAGGACTATATCTTCAGCGAGTCAAACTCGGTCTCTCCGATCCCACTTACTCCCTCTCTTCATGGAACCCACGCGACGACACTCCCTGCAACTGGTCCGGCGTTACTTGCGATTCCGTTACTCGTTCTGTTATCGCCCTCGACCTCTCCGATTTTCAGATCGCCGGACAGTTTCCCACTTTCGTTTGTCGTCTTCCTTCTCTTTCTTCACTATCTCTTTCCAATAACGCTATTAACGCTTCTCTTCCTGACGATGTCGCTTCCTGTTCTAGCCTCCAGTGGCTTAACTTGTCTCAGAATCTTCTTGCTGGTTCTATTCCCGATGCGATTTCCAAGATCTCGAATCTTCGCTCACTGGATCTCTCTGGAAACAACTTTTCCGGGGAGATTCCGACCAGTTTCGGTGGGTTTCAGCGACTTGAGACGCTGAATTTAGTTGATAATCTTTTGGATGGAACTATTCCGGGGAGTTTGGGTAACATTTCGAGTTTGAAAGAGCTTCAACTCGCTTACAATCCGTTTACGCGGAGTGAGATACCGAGTGCATTCGGGAACTTGACGAACCTGGAGGTTCTCTGGCTTGCTAACTGTAATCTTGTCGGTCAGATTCCGGCAACTGTTGGCCGGATGACTCGGCTTACGAATCTTGACTTGTCCAATAATAGACTCAGTGGGTCGATTCCGGTTTCACTCACTCAAATGAAAAGTTTAGTTCAAATTGAACTATTTAACAACTCGCTCTCCGGGGAGTTGCCTTTGGGACTGTCTAATTTAACTGCACTTCGAAGAATTGATGTGTCGATGAATCACTTGACTGGAACAATTCCGGATGAACTGTGTGCATTACAGCTTGAGTCGCTAAATTTGTTCGAGAATCGATTGGAAGGGCCTTTGCCGGAGAGTATCGTTAATTCCCCTTACTTGAATGAGCTCAAATTGTTTAACAACAAGCTTAGTGGACAGTTACCGAGTAAACTCGGCCAAAACTCGCCATTAGTGCATCTTGATGTTTCATACAACGGATTTTCTGGCGGAATCCCTGAAAACTTGTGTGCAAAAGGGACATTGGAAGAACTTATTTTGATTTACAATTCGTTTTCCGGAAGAATCCCGGCAAGTCTTGGAAAATGCAGCAGCTTAAGCCGGATTCGAATGAGGAACAACAGACTCTCGGGTGCGGTTCCTGATGAATTCTGGGGTCTGCCCAATGTCTATTTGCTTGAGCTCGTTGAGAATTCTCTTTCTGGGTCTATTTCTTCGATGATATCTAGCGCTAAGAATCTCTCTATTTTGATGATCTCAGAAAATCAATTTTCAGGGTTAATTCCTTCAGAGATTGGGTCGTTAAGCAATCTGACTGAACTTTCAGGTAGTGACAATATGTTTTCCGGTCGAATCCCGGGAACTTTGGTAAAGTTAAACTTGTTGAGTACACTCGATCTAAGCAAGAACAAACTTTCTGGTGAATTGCCAATGGGAATTGGAGCTTTGAAAAGGCTAAACGAGTTAAATTTAGCAAACAACAGGCTATCTGGCAATATCCCGAGTGAAATTGGAAGCCTACCTGTGCTTAATTATCTCGATCTTTCAAGTAACCATCTCAGTGGAAGTATACCCCTTGAATTGCAGAATTTGAAACTGAATTCACTAAATCTGTCGAACAATCGGTTATCAGGAGTACTTCCTCCTCTTTATGCAGAGGATATTTACAGAGATAGCTTTCTGGGTAATCCAGGTTTGTGCAATAACGACCCAAGTCTTTGTCCTCATATTGGAAAAGGCAAAAACCAAGGCTATTGGCTTCTCAGATCCATTTTTCTACTTGCTATCATTGTTTTTTTTGTTGGGGTCATTTGGTTTTTCTTGAAGTACAAGGAATTCAAGAAGAGTAAAAAAGGAATTGCCATGTCCAAGTGGAAATCATTTCATAAGCATGGTTTTAGTGAATATGAAATAGCAGATTGCCTCAGTGAAGACAAAGTCATTGGAAGTGGAGCATCTGGCAAAGTGTACAAAGTTGTGCTAAAAAACGGCGAGATCGTGGCGGTGAAGAAGCTATGGCAAGGAGCAAGAAAAGAGGACACAAGTTTGGATTCAGAGAAAGATGGATTTGAAGCTGAAGTTGAGACTTTAGGGAAGATCCGTCACAAGAATATTGTAAGGTTATGGTGCTGCTGCAACACTGGCAACTGCAAGCTGCTTGTTTATGAGTACATGCCTAATGGAAGCTTGGGAGATTTGTTGCACGGCAGCAAAAAGCGCTTTCTGGATTGGCCTACAAGGTATAAAGTAGTTTTGGATGCAGCTGAAGGGCTTTCTTACTTGCATCACGACTGTGCTCCTCCAATTGTTCATAGGGATATTAAGTCCAACAATATATTGCTTGATTCTGAGTTTGGAGCTAGAGTTGCTGACTTTGGATTGGCAAAGTTTTTGAACGCTGGCAAGGGATCAGAATCAATGTCTGTCATTGCCGGTTCTTGTGGTTATATTGCACCAGAATATGCTTATACTTTAAGAGTAAACGAAAAGAGTGACATCTACAGCTTTGGGGTGGTGATTTTAGAGCTAGTGACAGGGCGGCCTCCAAATGATCCAGAATTTGGGGATAGAGACTTGACAAAGTGGGTCTATGCCACCGTCGATGGTAGAGGACTCGATCGAGTGATTGATCCGACACTCGGTTCTGAATACAAGGAAGAAATATACAGAGTCCTTGATGTGGGACTGCTTTGCACAAGCTCACTTCCCATCAACCGCCCTTCAATGAGACGAGTCGTTAAACTGCTGCAGGAGGCTGCCACAGAAACCAGACCCGCCATTGTTAAAAAGGAACCCAAACTTTCTCCATATTTCTCCTAG 2937 43.34 MPSLLLLLLLLLLLLSSPLVCSLNQEGLYLQRVKLGLSDPTYSLSSWNPRDDTPCNWSGVTCDSVTRSVIALDLSDFQIAGQFPTFVCRLPSLSSLSLSNNAINASLPDDVASCSSLQWLNLSQNLLAGSIPDAISKISNLRSLDLSGNNFSGEIPTSFGGFQRLETLNLVDNLLDGTIPGSLGNISSLKELQLAYNPFTRSEIPSAFGNLTNLEVLWLANCNLVGQIPATVGRMTRLTNLDLSNNRLSGSIPVSLTQMKSLVQIELFNNSLSGELPLGLSNLTALRRIDVSMNHLTGTIPDELCALQLESLNLFENRLEGPLPESIVNSPYLNELKLFNNKLSGQLPSKLGQNSPLVHLDVSYNGFSGGIPENLCAKGTLEELILIYNSFSGRIPASLGKCSSLSRIRMRNNRLSGAVPDEFWGLPNVYLLELVENSLSGSISSMISSAKNLSILMISENQFSGLIPSEIGSLSNLTELSGSDNMFSGRIPGTLVKLNLLSTLDLSKNKLSGELPMGIGALKRLNELNLANNRLSGNIPSEIGSLPVLNYLDLSSNHLSGSIPLELQNLKLNSLNLSNNRLSGVLPPLYAEDIYRDSFLGNPGLCNNDPSLCPHIGKGKNQGYWLLRSIFLLAIIVFFVGVIWFFLKYKEFKKSKKGIAMSKWKSFHKHGFSEYEIADCLSEDKVIGSGASGKVYKVVLKNGEIVAVKKLWQGARKEDTSLDSEKDGFEAEVETLGKIRHKNIVRLWCCCNTGNCKLLVYEYMPNGSLGDLLHGSKKRFLDWPTRYKVVLDAAEGLSYLHHDCAPPIVHRDIKSNNILLDSEFGARVADFGLAKFLNAGKGSESMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRPPNDPEFGDRDLTKWVYATVDGRGLDRVIDPTLGSEYKEEIYRVLDVGLLCTSSLPINRPSMRRVVKLLQEAATETRPAIVKKEPKLSPYFS 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2785059 2788285 - CrPI670011_02g005720.1 Cre02g0572 489853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0572 978 Pfam Leucine Rich Repeat 308 329 IPR001611 GO:0005515(InterPro)
Cre02g0572 978 Pfam Leucine Rich Repeat 357 376 IPR001611 GO:0005515(InterPro)
Cre02g0572 978 Pfam Leucine Rich Repeat 501 521 IPR001611 GO:0005515(InterPro)
Cre02g0572 978 Pfam Leucine Rich Repeat 286 307 IPR001611 GO:0005515(InterPro)
Cre02g0572 978 Pfam Leucine Rich Repeat 188 211 IPR001611 GO:0005515(InterPro)
Cre02g0572 978 Pfam Leucine Rich Repeat 237 258 IPR001611 GO:0005515(InterPro)
Cre02g0572 978 Pfam Leucine Rich Repeat 164 185 IPR001611 GO:0005515(InterPro)
Cre02g0572 978 Pfam Leucine Rich Repeat 549 570 IPR001611 GO:0005515(InterPro)
Cre02g0572 978 Pfam Leucine Rich Repeat 213 234 IPR001611 GO:0005515(InterPro)
Cre02g0572 978 Pfam Leucine Rich Repeat 571 588 IPR001611 GO:0005515(InterPro)
Cre02g0572 978 Pfam Leucine Rich Repeat 452 474 IPR001611 GO:0005515(InterPro)
Cre02g0572 978 Pfam Leucine Rich Repeat 525 546 IPR001611 GO:0005515(InterPro)
Cre02g0572 978 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524(InterPro)
Cre02g0572 978 SUPERFAMILY L domain-like 308 615 - -
Cre02g0572 978 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Cre02g0572 978 ProSiteProfiles Protein kinase domain profile. 681 966 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g0572 978 Pfam Leucine rich repeat 91 151 IPR001611 GO:0005515(InterPro)
Cre02g0572 978 FunFam Receptor-like protein kinase HSL1 308 615 - -
Cre02g0572 978 Gene3D Ribonuclease Inhibitor 280 615 IPR032675 -
Cre02g0572 978 FunFam Receptor-like protein kinase HSL1 664 763 - -
Cre02g0572 978 PANTHER RECEPTOR-LIKE PROTEIN 55 381 955 - -
Cre02g0572 978 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 764 972 - -
Cre02g0572 978 Gene3D Ribonuclease Inhibitor 177 279 IPR032675 -
Cre02g0572 978 Gene3D Ribonuclease Inhibitor 25 176 IPR032675 -
Cre02g0572 978 FunFam Leucine-rich receptor-like protein kinase family protein 204 302 - -
Cre02g0572 978 Gene3D Transferase(Phosphotransferase) domain 1 764 972 - -
Cre02g0572 978 Pfam Protein kinase domain 683 890 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g0572 978 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g0572 978 Gene3D Phosphorylase Kinase; domain 1 663 763 - -
Cre02g0572 978 SMART LRR_typ_2 186 210 IPR003591 -
Cre02g0572 978 SMART LRR_typ_2 90 114 IPR003591 -
Cre02g0572 978 SMART LRR_typ_2 138 161 IPR003591 -
Cre02g0572 978 SMART LRR_typ_2 235 259 IPR003591 -
Cre02g0572 978 SMART LRR_typ_2 283 307 IPR003591 -
Cre02g0572 978 SMART LRR_typ_2 522 546 IPR003591 -
Cre02g0572 978 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 23 186 - -
Cre02g0572 978 SMART serkin_6 681 977 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g0572 978 PRINTS Leucine-rich repeat signature 546 559 - -
Cre02g0572 978 PRINTS Leucine-rich repeat signature 238 251 - -
Cre02g0572 978 ProSiteProfiles Leucine-rich repeat profile. 237 259 IPR001611 GO:0005515(InterPro)
Cre02g0572 978 SUPERFAMILY RNI-like 72 369 - -
Cre02g0572 978 SUPERFAMILY Protein kinase-like (PK-like) 674 955 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0572 Cre-Chr2:2785059 Cre03g0925 Cre-Chr3:8021185 2.60E-167 dispersed
Cre02g0572 Cre-Chr2:2785059 Cre08g0809 Cre-Chr8:21155273 1.60E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63849 PF00069 Pkinase 1.40E-44 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0572 - - - 0.0