Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0578 ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGACGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAATATGCTCAAGTGCTACGAATGCTAGGTAATGGTCGATGTGAAGCGATGTGTATCGATGGGACTAAACGTCTCTGCCATATTCGGGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATTATACTCGTTGGTCTTCATGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGTCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAATGAGGGTATCGTGGGGGGTATGGATGATGATGATGATGAAGGTGGTGATGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATTTAG 441 42.86 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGGMDDDDDEGGDDAYIEFEDEDIDKI 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2839431 2839871 + CrPI670011_02g005780.1 Cre02g0578 489859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0578 146 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Cre02g0578 146 FunFam Eukaryotic translation initiation factor 1A 2 146 - -
Cre02g0578 146 SMART eIF1neu4 28 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Cre02g0578 146 SUPERFAMILY Nucleic acid-binding proteins 2 142 IPR012340 -
Cre02g0578 146 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Cre02g0578 146 CDD S1_IF1A 33 109 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Cre02g0578 146 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743(InterPro)|GO:0006413(InterPro)
Cre02g0578 146 Gene3D - 2 146 IPR012340 -
Cre02g0578 146 PANTHER EIF-1A 1 146 IPR001253 GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005737(PANTHER)|GO:0006413(InterPro)|GO:0006413(PANTHER)
Cre02g0578 146 MobiDBLite consensus disorder prediction 1 25 - -
Cre02g0578 146 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Cre02g0578 146 NCBIfam translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0578 Cre-Chr2:2839431 Cre07g1922 Cre-Chr7:34683400 1.40E-48 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0578 K03236 - csv:101207840 267.314