Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre02g0607 | ATGCTCTTAGCTGTTATCAACTTTGCCGGGAACTTCATCGGACGTCTCTCAGCCGGAGCACCATCACTGCTTCCTCAACTCTTTGATTCGCCTGCTCGAATTCCGAAGACGCACTTGTTTCAGTATACAACTAGACGTGGCGTGGCATCCAGTTTCTGTGTCAATCAAAGGGACCAGTTAGAGAATGAAGTTGATTCTGATCAATTGGAGCATGAAAACAGTTCAGAAAGTCAACCGCAAACGTCTCAGGACGATCCTGGTGGAACTAATGCATCAAAATCAGATCACAAATGCACAGGGGCTGCCAGTATTACACTTGAAGAAGCTGTCAAGCAGCCTGAAGTTACAATCGAACAAGTGGATCGAGGAGAAATCTCTAATATAGTGACAGAGAAAGTGACCCATAAGCCAATTACTGCAGACCAGAACTCCCATTCTGATTTGAAAGTATGTATTACCTCTACTATACGAGAGAAAGTATCAGAGGATGGGTATAACTGGCGGAAATATGGTCAGAAACTGGTTAAGGGAAATGTCTTTGTTAGAAGCTATTACAGATGTACGCATCCTACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAAGATCACAGATACTGTTTACTTTGGCCAGCATGATCATCCTAAACCTCAACCTCACATTCCAGTTGCTGTTGGAGTCGTTACCATGGTTGAAGAAAAATTAGATGAACATGCTTCTGGAAATTCTCAAGATAAGACCTCCATTGCGCCTGGCCAGACGCCTCATCAAACTGAGCTAGCTGATATGCGTCAACCGTCATCAGTTATGGCCAGTGATAATGTAAAAGATGAAGCTTCGAAAAGGTCTAGGATTAATGATGAGGTTGACAGTGATGATACACCAGACTTGAAACGAGAGAAGAAAAGATGTAATATTGACGTGACAGTAGCAGACAAGTCAACTGTTGAATCTCGGGTTGTTGTTCAAACTCCTAGCGAGGTTGACATCGTCAATGATGGATACCGCTGGCGGAAGTATGGACAGAAATTGGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCGTCTCATGATCCAAAAGTGGTGCTTACCACGTATGAGGGTCAGCATGACCATGATATGCCTCCTACAAGGACGGTGACGTTGAACTCAGTTGGATCCACAGCAGCCCATAGTGATGAGACAAAACCAAAACCGGTCGGTAGTTCCATTGGCCATGATACGGTGGTTCATGCTACTAAGGATTCTCGAAATAATTCAAGTTCTGAAGGCAAATTAATTGAAAAGAATGGCAAGTCGAATGCCACAGAAGCAAGTGATGGCATAGTCCTCGATATGGTGGTCAATCCTAGTCCAGGAGTTGCGAGGGGACAAAATAAGCAGCTTAAAGTAGCAATTGAAAGCTAA | 1464 | 43.92 | MLLAVINFAGNFIGRLSAGAPSLLPQLFDSPARIPKTHLFQYTTRRGVASSFCVNQRDQLENEVDSDQLEHENSSESQPQTSQDDPGGTNASKSDHKCTGAASITLEEAVKQPEVTIEQVDRGEISNIVTEKVTHKPITADQNSHSDLKVCITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHDHPKPQPHIPVAVGVVTMVEEKLDEHASGNSQDKTSIAPGQTPHQTELADMRQPSSVMASDNVKDEASKRSRINDEVDSDDTPDLKREKKRCNIDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKVVLTTYEGQHDHDMPPTRTVTLNSVGSTAAHSDETKPKPVGSSIGHDTVVHATKDSRNNSSSEGKLIEKNGKSNATEASDGIVLDMVVNPSPGVARGQNKQLKVAIES | 487 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3052017 | 3055879 | + | CrPI670011_02g006070.1 | Cre02g0607 | 489888 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre02g0607 | 487 | MobiDBLite | consensus disorder prediction | 404 | 459 | - | - | |
Cre02g0607 | 487 | Gene3D | WRKY domain | 146 | 221 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre02g0607 | 487 | SMART | WRKY_cls | 334 | 393 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre02g0607 | 487 | SMART | WRKY_cls | 161 | 219 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre02g0607 | 487 | ProSiteProfiles | WRKY domain profile. | 329 | 394 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre02g0607 | 487 | FunFam | WRKY transcription factor | 150 | 221 | - | - | |
Cre02g0607 | 487 | ProSiteProfiles | WRKY domain profile. | 156 | 220 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre02g0607 | 487 | MobiDBLite | consensus disorder prediction | 63 | 97 | - | - | |
Cre02g0607 | 487 | SUPERFAMILY | WRKY DNA-binding domain | 326 | 394 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre02g0607 | 487 | SUPERFAMILY | WRKY DNA-binding domain | 156 | 220 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre02g0607 | 487 | MobiDBLite | consensus disorder prediction | 278 | 300 | - | - | |
Cre02g0607 | 487 | Gene3D | WRKY domain | 321 | 387 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre02g0607 | 487 | MobiDBLite | consensus disorder prediction | 239 | 300 | - | - | |
Cre02g0607 | 487 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 202 | 425 | IPR044810 | GO:0003700(InterPro) | |
Cre02g0607 | 487 | FunFam | WRKY transcription factor 57 | 320 | 394 | - | - | |
Cre02g0607 | 487 | MobiDBLite | consensus disorder prediction | 73 | 97 | - | - | |
Cre02g0607 | 487 | MobiDBLite | consensus disorder prediction | 245 | 277 | - | - | |
Cre02g0607 | 487 | MobiDBLite | consensus disorder prediction | 433 | 456 | - | - | |
Cre02g0607 | 487 | Pfam | WRKY DNA -binding domain | 335 | 392 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre02g0607 | 487 | Pfam | WRKY DNA -binding domain | 162 | 218 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre02g0607 | 487 | Coils | Coil | 57 | 77 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g0607 | Cre-Chr2:3052017 | Cre10g0629 | Cre-Chr10:5852646 | 1.50E-59 | dispersed | |
Cre10g0687 | Cre-Chr10:6515505 | Cre02g0607 | Cre-Chr2:3052017 | 6.50E-70 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53092 | PF03106 | WRKY | 3.40E-26 | CL0274 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre02g0607 | K18834 | - | csv:101212482 | 757.288 |