Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0607 ATGCTCTTAGCTGTTATCAACTTTGCCGGGAACTTCATCGGACGTCTCTCAGCCGGAGCACCATCACTGCTTCCTCAACTCTTTGATTCGCCTGCTCGAATTCCGAAGACGCACTTGTTTCAGTATACAACTAGACGTGGCGTGGCATCCAGTTTCTGTGTCAATCAAAGGGACCAGTTAGAGAATGAAGTTGATTCTGATCAATTGGAGCATGAAAACAGTTCAGAAAGTCAACCGCAAACGTCTCAGGACGATCCTGGTGGAACTAATGCATCAAAATCAGATCACAAATGCACAGGGGCTGCCAGTATTACACTTGAAGAAGCTGTCAAGCAGCCTGAAGTTACAATCGAACAAGTGGATCGAGGAGAAATCTCTAATATAGTGACAGAGAAAGTGACCCATAAGCCAATTACTGCAGACCAGAACTCCCATTCTGATTTGAAAGTATGTATTACCTCTACTATACGAGAGAAAGTATCAGAGGATGGGTATAACTGGCGGAAATATGGTCAGAAACTGGTTAAGGGAAATGTCTTTGTTAGAAGCTATTACAGATGTACGCATCCTACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAAGATCACAGATACTGTTTACTTTGGCCAGCATGATCATCCTAAACCTCAACCTCACATTCCAGTTGCTGTTGGAGTCGTTACCATGGTTGAAGAAAAATTAGATGAACATGCTTCTGGAAATTCTCAAGATAAGACCTCCATTGCGCCTGGCCAGACGCCTCATCAAACTGAGCTAGCTGATATGCGTCAACCGTCATCAGTTATGGCCAGTGATAATGTAAAAGATGAAGCTTCGAAAAGGTCTAGGATTAATGATGAGGTTGACAGTGATGATACACCAGACTTGAAACGAGAGAAGAAAAGATGTAATATTGACGTGACAGTAGCAGACAAGTCAACTGTTGAATCTCGGGTTGTTGTTCAAACTCCTAGCGAGGTTGACATCGTCAATGATGGATACCGCTGGCGGAAGTATGGACAGAAATTGGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCGTCTCATGATCCAAAAGTGGTGCTTACCACGTATGAGGGTCAGCATGACCATGATATGCCTCCTACAAGGACGGTGACGTTGAACTCAGTTGGATCCACAGCAGCCCATAGTGATGAGACAAAACCAAAACCGGTCGGTAGTTCCATTGGCCATGATACGGTGGTTCATGCTACTAAGGATTCTCGAAATAATTCAAGTTCTGAAGGCAAATTAATTGAAAAGAATGGCAAGTCGAATGCCACAGAAGCAAGTGATGGCATAGTCCTCGATATGGTGGTCAATCCTAGTCCAGGAGTTGCGAGGGGACAAAATAAGCAGCTTAAAGTAGCAATTGAAAGCTAA 1464 43.92 MLLAVINFAGNFIGRLSAGAPSLLPQLFDSPARIPKTHLFQYTTRRGVASSFCVNQRDQLENEVDSDQLEHENSSESQPQTSQDDPGGTNASKSDHKCTGAASITLEEAVKQPEVTIEQVDRGEISNIVTEKVTHKPITADQNSHSDLKVCITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHDHPKPQPHIPVAVGVVTMVEEKLDEHASGNSQDKTSIAPGQTPHQTELADMRQPSSVMASDNVKDEASKRSRINDEVDSDDTPDLKREKKRCNIDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKVVLTTYEGQHDHDMPPTRTVTLNSVGSTAAHSDETKPKPVGSSIGHDTVVHATKDSRNNSSSEGKLIEKNGKSNATEASDGIVLDMVVNPSPGVARGQNKQLKVAIES 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3052017 3055879 + CrPI670011_02g006070.1 Cre02g0607 489888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0607 487 MobiDBLite consensus disorder prediction 404 459 - -
Cre02g0607 487 Gene3D WRKY domain 146 221 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g0607 487 SMART WRKY_cls 334 393 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g0607 487 SMART WRKY_cls 161 219 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g0607 487 ProSiteProfiles WRKY domain profile. 329 394 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g0607 487 FunFam WRKY transcription factor 150 221 - -
Cre02g0607 487 ProSiteProfiles WRKY domain profile. 156 220 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g0607 487 MobiDBLite consensus disorder prediction 63 97 - -
Cre02g0607 487 SUPERFAMILY WRKY DNA-binding domain 326 394 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g0607 487 SUPERFAMILY WRKY DNA-binding domain 156 220 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g0607 487 MobiDBLite consensus disorder prediction 278 300 - -
Cre02g0607 487 Gene3D WRKY domain 321 387 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g0607 487 MobiDBLite consensus disorder prediction 239 300 - -
Cre02g0607 487 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 202 425 IPR044810 GO:0003700(InterPro)
Cre02g0607 487 FunFam WRKY transcription factor 57 320 394 - -
Cre02g0607 487 MobiDBLite consensus disorder prediction 73 97 - -
Cre02g0607 487 MobiDBLite consensus disorder prediction 245 277 - -
Cre02g0607 487 MobiDBLite consensus disorder prediction 433 456 - -
Cre02g0607 487 Pfam WRKY DNA -binding domain 335 392 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g0607 487 Pfam WRKY DNA -binding domain 162 218 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g0607 487 Coils Coil 57 77 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0607 Cre-Chr2:3052017 Cre10g0629 Cre-Chr10:5852646 1.50E-59 dispersed
Cre10g0687 Cre-Chr10:6515505 Cre02g0607 Cre-Chr2:3052017 6.50E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53092 PF03106 WRKY 3.40E-26 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0607 K18834 - csv:101212482 757.288