Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0608 ATGATGCTCTTTCGGTTTTATAGACCCGTAAAGGATCTGGATGGAGAAAAGGCCAAACCACCAAAGGTTAGATTACTAGGTGGTTTCAAGGTGAAGAGGGCTAAGGAGCATTTCCATGGCCAAGGGTGGAGTAACCTACTTTATATCTTGCCATTTGGTGTAATTTTGATTCTGGGTGTTTGGTATATCTTTAGTCTTTGTGATGGGAGTTCAGTTCGGGAAGTGGAGATTCCAAATACGTGTAAAGAGAAGAGCTGGAACTTTCTGAAGCATTTCAATGTCAGTGAGAGTCAATTTCATGCTTTGGATTCGTTCTTCTTTCATTCAGATCAGACAGCATCTCTCCTCTGTGCTAAAGACTCAGAGCCTGGCAATGCACTGAAAGACTGCATTCCTTGTGCATTGAAGATTTTGGAACGGGAACAAGAATCGCAAAAGAAGCATGGGTGGCTTTCTGAAGATCTACAATCTGAAGGCCAGTGCCCAATTAGGGGTGAGATGGAGTCCTTCAATATTGGTCAATTGCAGTTAGTGGACAAGATACACTCACTTACTTCAAAATCTTCTTTTGCATTTGTGTCTCCCTGTCTTCAGATTCATAAAGAGAGGATCTTGCATACTAGGGAAATTGGAAATGGGCATTCTCGAAGTTTGAATGGATTAGTAATGGCATGCTTATGGATCCTTGCTGTAGTGATATCATGCCTGAAGATGTCTGGTTTTCATTTGAAATTAAAGAACCACATACACAAGCCAATAAAGCATCCATCGGTTGAGAATCAGCCAGTGATTCAGCTACAGCAGGTGTTGCTACAGCAGCAGTTAGATCCATCTCCAAGTCCTCCAAAAGGGGCTGGAAAATGGAGAAAGAAACTTCTTATAATATTTGTTTTGCTTGGAATTATTGGATCCTTTTGGCTCTTTTGGTATTTGAACAACAAAATCATCTTGAGGAGGGAAGAAACACTTTCTAACATGTGCGATGAGCGAGCTCGAATGTTACAGGATCAATTCAACGTTAGCATGAACCATGTTCATGCCTTGGCTATTCTGGTCTCCACTTTTCATCATGGCAAGCATCCTTCTGCCATTGATCAGAAAACATTCAGTGAATATGCAGAAAGAACAGCTTTTGAACGACCACTAACCAGTGGGGTGGCTTATGCTTTGAAAGTTGATCATTCAGACAGAAAGCGATTTGAAGAGGAACATGGGTGGACAATTAAGAAGATGGGAACAGAGGACCAGACCCTGGTTCAGGATTCTATTCCTGAGAATTTAGACCCTGCTCCCTTTCAGGATGAATATGCACCTGTGATATTTTCACAGGAAACTGTATCTCATATAGTTTCCATTGACATGATGTCTGGAAAGGAAGACCGCGAAAACATCTTGCGAGCGAGGGCTTCAGGGAAGGGAGTGCTGACATCTCCTTTCAAGCTTCTTAAGTCCAATCACCTAGGTGTTGTGCTCACTTTTGCTGTCTATAACGCTGAGCTTCCTCCTGATGCAACAGCAGAGCAACGTATTGAAGCTACTGTTGGGTATCTAGGGGCATCCTATGATGTTCCATCACTGGTGGACAAGCTTCTGCACCAACTTTCTAGCAAACAATCAATTGTTGTTGATGTTTACGACACAACTAATGCATCTGCTCCCATTAAGATGTATGGATCTGATGTAATAGATACTGGTCTATTGCACATTAGCAACCTGGATTTTGGAGACCCTCAAAGGAAGCATGAGATGCATTGCAGATTTAAGCAGAAACCACAATTACCATGGATGGCTATAAATGCATCAGTGGGAGTTCTGGTTATTACTTTACTAGTTGGCCATATATTTTATGCGGCCATAAGTCGAATCGCAAAAGTGGAAAATGACTATGATGAGATGATGAAACTCAAAAGTCGCGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCAACTGTTTCTCACGAGATCAGGACGCCAATGAATGGTGTTTTAGGGATGCTGAAAATGCTGATGGACACTGATCTTGACCCAAACCAACTGGACTGTGCCCAGACTGCATATGATAGTGGGAAAGAATTAATATCACTAATAAATGAGGTTCTTGACCAAGCTAAAATAGAATCAGGCAGGCTTGAACTTGAAGATGTACCATTCGATCCACGAGCTTTACTTGATAATGTGCTGTCAATGTTCTCTGGAAAATGTCATGAGAAGGGAATAGAGTTAGCTGTTTATGTCTCTAATTGGGTCCCTGAAGTTCTCATCGGTGACCCTGGACGCTTCCGGCAGATAATTACCAATCTTGTGGGAAATTCAATCAAGTTCACCAAGGACAAAGGACACATATTTGTTACTGTACACCTGGCAGACGAGGTGAGGACTCCCCTCGAGGCAATGGACAGTGTGCTAAGACAAGGCCTACATTTAGTGAATGAGACGCCGAGAAAAAGTCACAATACATTAAGTGGGTTTCCAGTGGTCGAGAGGTGCAAGAGTTGGGAGTTTTTCGAGATATTTAGAAGAACAGATGTGATGAAAGAAAACGATGACGTAATTAAGTTGCTTGTATCAGTTGAGGATACGGGTCATGGAATTCCTTTAGATGCACAAAGTCGAATTTTTATGCCTTTTATGCAAGCAGATAGTTCCACTTCACGCAAGTATGGTGGGACTGGAATAGGTCTGAGCATCAGCAAATGTCTGGTGGATCTAATGGGTGGAGAGATAGGTTTTGTGAGCCAACCTGGTGTTGGTAGCACATTTTCATTTACTGGATGTTTGAGAAAAGGCGATACGAGGTCTCTTGATACAAAGTTGCAGCAGAATGATTCGGCCATGTTAGATTTCCGAGGACTGCGAGCGTTGGTACTGGATGATAGAAGCATTCGAGCTGAGGTAACAAAATATCATCTGAAGAGGTTAGGGATCTCAGTGGACATAGTTTCGAGTCTGGCTTCTGCACATGAATACTTAACTAATAATTGCATCAAAAGTCCATCCAAGCGTTTGGCCATGGTGCTTATTGACAAAGATGTATGGGATAAGGAAACCGATCCGACAAACCCTCGCGTGTTTAAAGAACATGGGGTAAATGGGAAGGAAGAATGGAGAGGAAGTCCTAAGATCTTTCTCTTAGCCACCTCCATTAGCCCTCAAGAGACTAGAGCTCTCAAGTCGGCTGGTTATGTTGATAATGTAATGACAAAACCCCTTAGGTCAGGTGTCCTGATTGGATGTTTCCAGGAAGCTTTCGGGAAGGTCAACCGAAAGAAACCGTCTATTCTGGGGAACTTACTGAGAGAAAAGCAGATATTGGTGGTTGATGACAATGCTGTCAATAGACGAGTTGCCGAAGGTGCTCTAAAGAAATATGGAGCAAAGGTTACCTGTGTGGAAAGTGGTGGCGCTGCTATTTCATTGTTAAAACCACCACACAAGTTCAATGCTTGCTTCATGGATCTTCAAATGCCTGAGATGGATGGGTTTGAAGCAACACGGCAGATACGAAATAACGAAAATAAGGTTAACGAGGACATTGCTTCCGGGAAAGCATCAATTGAGATGTTTGGGAATGTGGCTCATTGGCATACACCGGTGTTGGCCATGACAGCTGATGTGATTCAGGCTACAAATGAAGCATGCATGAATTGTGGGATGGATGGTTATGTAGCAAAGCCTTTCGAAGAAGAAAAATTATATTCAGCAGTCGCTCGTTTCTTTGAGTCCGATGCTCGAGTAGAACATGAATAG 3753 42.66 MMLFRFYRPVKDLDGEKAKPPKVRLLGGFKVKRAKEHFHGQGWSNLLYILPFGVILILGVWYIFSLCDGSSVREVEIPNTCKEKSWNFLKHFNVSESQFHALDSFFFHSDQTASLLCAKDSEPGNALKDCIPCALKILEREQESQKKHGWLSEDLQSEGQCPIRGEMESFNIGQLQLVDKIHSLTSKSSFAFVSPCLQIHKERILHTREIGNGHSRSLNGLVMACLWILAVVISCLKMSGFHLKLKNHIHKPIKHPSVENQPVIQLQQVLLQQQLDPSPSPPKGAGKWRKKLLIIFVLLGIIGSFWLFWYLNNKIILRREETLSNMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKTFSEYAERTAFERPLTSGVAYALKVDHSDRKRFEEEHGWTIKKMGTEDQTLVQDSIPENLDPAPFQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNAELPPDATAEQRIEATVGYLGASYDVPSLVDKLLHQLSSKQSIVVDVYDTTNASAPIKMYGSDVIDTGLLHISNLDFGDPQRKHEMHCRFKQKPQLPWMAINASVGVLVITLLVGHIFYAAISRIAKVENDYDEMMKLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDPNQLDCAQTAYDSGKELISLINEVLDQAKIESGRLELEDVPFDPRALLDNVLSMFSGKCHEKGIELAVYVSNWVPEVLIGDPGRFRQIITNLVGNSIKFTKDKGHIFVTVHLADEVRTPLEAMDSVLRQGLHLVNETPRKSHNTLSGFPVVERCKSWEFFEIFRRTDVMKENDDVIKLLVSVEDTGHGIPLDAQSRIFMPFMQADSSTSRKYGGTGIGLSISKCLVDLMGGEIGFVSQPGVGSTFSFTGCLRKGDTRSLDTKLQQNDSAMLDFRGLRALVLDDRSIRAEVTKYHLKRLGISVDIVSSLASAHEYLTNNCIKSPSKRLAMVLIDKDVWDKETDPTNPRVFKEHGVNGKEEWRGSPKIFLLATSISPQETRALKSAGYVDNVMTKPLRSGVLIGCFQEAFGKVNRKKPSILGNLLREKQILVVDDNAVNRRVAEGALKKYGAKVTCVESGGAAISLLKPPHKFNACFMDLQMPEMDGFEATRQIRNNENKVNEDIASGKASIEMFGNVAHWHTPVLAMTADVIQATNEACMNCGMDGYVAKPFEEEKLYSAVARFFESDARVEHE 1250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3057570 3068416 - CrPI670011_02g006080.1 Cre02g0608 489889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0608 1250 ProSiteProfiles Response regulatory domain profile. 954 1085 IPR001789 GO:0000160(InterPro)
Cre02g0608 1250 CDD HisKA 645 706 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre02g0608 1250 Gene3D - 311 363 - -
Cre02g0608 1250 SMART HKATPase_4 757 930 IPR003594 -
Cre02g0608 1250 FunFam Histidine kinase 4 364 591 - -
Cre02g0608 1250 PRINTS Bacterial sensor protein C-terminal signature 914 927 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cre02g0608 1250 PRINTS Bacterial sensor protein C-terminal signature 855 869 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cre02g0608 1250 PRINTS Bacterial sensor protein C-terminal signature 890 908 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cre02g0608 1250 PRINTS Bacterial sensor protein C-terminal signature 873 883 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cre02g0608 1250 Gene3D - 1098 1247 - -
Cre02g0608 1250 Gene3D - 947 1090 - -
Cre02g0608 1250 Pfam CHASE domain 363 557 IPR006189 -
Cre02g0608 1250 SUPERFAMILY CheY-like 949 1085 IPR011006 -
Cre02g0608 1250 ProSiteProfiles Response regulatory domain profile. 1104 1241 IPR001789 GO:0000160(InterPro)
Cre02g0608 1250 PANTHER TWO-COMPONENT HISTIDINE KINASE 284 1240 IPR050956 -
Cre02g0608 1250 Gene3D - 617 708 - -
Cre02g0608 1250 Pfam His Kinase A (phospho-acceptor) domain 645 710 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre02g0608 1250 SMART CHASE_2 360 559 IPR006189 -
Cre02g0608 1250 SMART REC_2 1103 1237 IPR001789 GO:0000160(InterPro)
Cre02g0608 1250 Gene3D CHASE domain 364 591 IPR042240 -
Cre02g0608 1250 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 854 925 IPR003594 -
Cre02g0608 1250 Pfam Response regulator receiver domain 1105 1189 IPR001789 GO:0000160(InterPro)
Cre02g0608 1250 SMART HisKA_10 645 710 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre02g0608 1250 Gene3D - 709 930 IPR036890 -
Cre02g0608 1250 FunFam Histidine kinase 4 617 708 - -
Cre02g0608 1250 ProSiteProfiles Histidine kinase domain profile. 652 930 IPR005467 -
Cre02g0608 1250 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 631 711 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre02g0608 1250 CDD HATPase_EvgS-ArcB-TorS-like 762 928 - -
Cre02g0608 1250 Coils Coil 622 642 - -
Cre02g0608 1250 ProSiteProfiles CHASE domain profile. 360 584 IPR006189 -
Cre02g0608 1250 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 699 925 IPR036890 -
Cre02g0608 1250 CDD REC_hyHK_CKI1_RcsC-like 1105 1237 - -
Cre02g0608 1250 SUPERFAMILY CheY-like 1101 1241 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0608 Cre-Chr2:3057570 Cre10g0323 Cre-Chr10:2081695 3.10E-40 dispersed
Cre02g1812 Cre-Chr2:31444791 Cre02g0608 Cre-Chr2:3057570 8.30E-29 transposed
Cre05g1767 Cre-Chr5:29515973 Cre02g0608 Cre-Chr2:3057570 2.40E-43 transposed
Cre06g0986 Cre-Chr6:3392000 Cre02g0608 Cre-Chr2:3057570 4.8e-311 transposed
Cre09g0530 Cre-Chr9:4964369 Cre02g0608 Cre-Chr2:3057570 4.30E-28 transposed
Cre09g1861 Cre-Chr9:37119572 Cre02g0608 Cre-Chr2:3057570 2.00E-276 transposed
Cre11g0603 Cre-Chr11:3144989 Cre02g0608 Cre-Chr2:3057570 2.60E-279 transposed
Cre11g1448 Cre-Chr11:21733538 Cre02g0608 Cre-Chr2:3057570 2.10E-08 transposed
Cre02g0608 Cre-Chr2:3057570 Cre02g1268 Cre-Chr2:13941677 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53093 PF03924 CHASE 5.20E-36 CL0165 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0608 K14489 - vvi:100263145 1538.09