Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0625 ATGTCTTCAACGTCAACAAATAAGACTGTGTGTTCTAAGACCAGCTGCGACCGATCAAAACACGGGGCTCATGTTGTTGCACAAACCCCAATTGATGCAAAGCTTCATGTTGACTTTGAAGGTTCTGAAAGGTTCTTTGATTACTCTGCGTCGGTTGATATCAACGCCGCATGCTCCACTAGCCATGTTCATGCATCCACTGTACAGTCATACCTTCAAAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTGGACGGGGAAAACTTGTCTGTCCTTGCATATAGTGAAAATGCCCCCGAAATGTTGGACTTGGCCCCACACGCTGTGCCTAACATCGAGCAGCAAGAAGCTTTAACTTTTGGAACAGATGTACGAACACTTTTTCGTTCCCCAGGAGCTGCAGCTTTACAGAAAGCAGCTGACTTTAAGGAAGTTAATCTTCTCAATCCTATACTTGTCCATTGTAAAACTTCAGGTAAACCATTTTATGCAATTTTGCATCGAGTAGACGTGGGATTAATTATAGATCTGGAACCAGTTAATCCAGCTGATGTGCCAGTGACCGCAGCTGGGGCATTGAAATCGTATAAGCTAGCCGCCAAAGCCATCTCAAAATTGCAGTCCTTGCCTAGTGGGAATATATCTCTTTTATGTGAGGTATTGGTTAAGGAGGTTAGCGATTTGACAGGTTACGATCGAGTAATGGTGTATAAATTCCACGATGATGAGCATGGAGAAGTTGTAGCTGAATGCTGTCGGTCGGACTTAGAACCATATCTTGGCTTGCACTACCCAGCTACTGACATACCTCAAGCTTCAAGGTTTCTTTTCTTGAAGAATAAAGTTAGAATGATATGTGATTGTTTGGCACCTCCAGTTAAAGTGCTTCAAAACAGGAGATTGACTCAGGCATTAAGTCTATGTGGGTCTGCATTGAGGGCTCCTCACGGTTGTCATGCTCGGTATATGATGAATATGGGTTCTATTGCATCTCTTGTGATGTCTATTACGATCAATGAGAATGATAGTGAATCAGAGAATGATCAAGAAAAGGATAGAAAGTTGTGGGGTTTAGTAGTTTGCCATCACACTAGCCCTAGATTTGTTCCATTTCCTTTGCGATATGCTTGTGAATTCTTGATTCAAGTATTTGGTATACAGATTAACAAAGAGGTGGAGTTGCAAGCTCAGTTGAAGGAAAAACACATATTGCGAATTCAAACAGTTCTTTGTGATATGCTGCTAAGACATGCTCCAGTAGGAATTGTTACTCAATCTCCCAATATTATGGATCTTGTTAAATGTAATGGTGCTGCCTTATATTTCAGAAAGAAATTTTGGCTACTTGGAGTCACCCCAACAGAGGCACAAATTAGAAATATAGCTGAATGGCTTCTCAAAGACCATAGTGGAAGCACAGGTTTAAGTACTGATAGCCTTATTGAAGCTGGTTTCTATGGTGCTTCTGCACTTGGTGATGAGGTTTGTGGAATGGCTGCTGTTAGGATCACGTCTAAGGACTTCCTTTTCTGGTTTCGGTCACATATGGCTAAAGAAATCAGGTGGGGTGGTGCAAAACATGATCCTGGTGACGAGGATGATGGAAGAAAGATGCATCCGAGATCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCTTGGGAAGATGTGGAAATGGATGCCATCCATTCACTGCAATTAATATTACGAGGTTCTTTACAGGATGAGAATGAAGAAGAATGCAAGGTGATTACAAACATCCCACTCCCACCATTTGATGAGAAGACACAACAGTTGGATGAATTGCGTGTCATCACAAATGAGATGGTTCGCCTAATTGAGACAGCTGCAGTGCCCATCTTGGCTGTAGATGTCTTTGGCAAGATCAATGGTTGGAACTCCAAAGCCACTGAGCTTACAGGATTGCCTATCCAGCAAGCCATTGGCATGCCCTTAGTTGATTGTCTAGTGAATGATTCTGTTAAGGTGGTAAAGAAAATGCTGTCCTTGGCCATTCAAGGTATTGAAGAGAAGAACATTGAAATCAAACTTAAAACATTTGGAATTCCAGGGCAAAATGGTCCGGTGATCTTAGAAGTTAACTCGTGTTGTAGCCGAGACCTAAACAATAATGTCGTAGGAATTTCTTTTATAGGGCAGGATGTTACGAAGCAAAAACTGGTTATGAACCAATACACCCAAATCCAAGGTGATTACATGGGGATTATGCGAAACCCATCTGCACTTATTCCTCCAATTTTTATGACCGATAGCGATGGCCGGTGCTTGGAATGGAATGATGCAATGGAAAAGTTATCTGGTTTTAGAAGGATAGAGATGACAAGTAGGATGCTTCTTGGGGAGGTTTTCACGCTTGAAAACTTTGGCTGCCGTGTGAAAGATCACACATTGACCAAGCTTAGGATAATACTGCATAGAGTAATTTCAGGCCAGGATGCAGAGAAATCTTTGTTTAGGTTCTGTGATCGTGAAGGAAATTATGTTGAAACGTTGCTCACTGCAAGCAAAAGGACTGATGCAGAGGGTAATATCACTGGGGTTTTCTTCTTCTTGCACGTGGCTAGTCCAGAACTTCAATATGCTTTGGAGATGCAGCGGATTTCAGAACAAGCTACAGCTGAAAATCTCCACAAATTGGCATATCTACGTCAAGAAATTCAAAAACCCCTTGATGGGATTGCATTTATACAGAATCTAATGGGTTCATCTGACTTAAGCAAAGAGCAAATGCGGCTACTTAAATTGAACACTTCGAGTCGGGAACAATTGCACAAGATTATTCATGATACTGATATCCAGAGTATTGAGGAATGTTACATGGAAACAAACTGTAGTGAATTCAACCTTGGAGATGTTCTTGACGTTGTAATGAATCAAAACATGATTTTGAGTCAAGAGCGTGGGGTGAAGATCATTTGTGAACCACCTACTGACGTGTCATCTCTGCACTTATATGGAGATAACATGAGGCTACAGCAAGTGCTCTCTGAGTTCTTGACTAACACACTTCTCTTCAGTTGCAAAGAATCATCAGTTGTCTTTAAAGCAACTCCAAGGAAGGAACGCATTGGGAAGGGAATCCACATTGTTCATCTTGAATTGAGAATCACCCATCCCGCCCCGGGAATTCCTGTACACTTAATTCGGGAGATGTTTGATGACAACAATGATAGCTCAAAGGAAGGTCTTGGCTTATACATAAGCCAGAAGCTTCTGAAGATCATGAATGGCACTGTACAGTATCTTCGAGAGGCCGAAACCTCGTCATTCATCATCCTCATAGAATTCCCCTTGGTAGAGCATATTGCTAGATGA 3366 41.89 MSSTSTNKTVCSKTSCDRSKHGAHVVAQTPIDAKLHVDFEGSERFFDYSASVDINAACSTSHVHASTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPGAAALQKAADFKEVNLLNPILVHCKTSGKPFYAILHRVDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISKLQSLPSGNISLLCEVLVKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRSDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQNRRLTQALSLCGSALRAPHGCHARYMMNMGSIASLVMSITINENDSESENDQEKDRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQAQLKEKHILRIQTVLCDMLLRHAPVGIVTQSPNIMDLVKCNGAALYFRKKFWLLGVTPTEAQIRNIAEWLLKDHSGSTGLSTDSLIEAGFYGASALGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPGDEDDGRKMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDENEEECKVITNIPLPPFDEKTQQLDELRVITNEMVRLIETAAVPILAVDVFGKINGWNSKATELTGLPIQQAIGMPLVDCLVNDSVKVVKKMLSLAIQGIEEKNIEIKLKTFGIPGQNGPVILEVNSCCSRDLNNNVVGISFIGQDVTKQKLVMNQYTQIQGDYMGIMRNPSALIPPIFMTDSDGRCLEWNDAMEKLSGFRRIEMTSRMLLGEVFTLENFGCRVKDHTLTKLRIILHRVISGQDAEKSLFRFCDREGNYVETLLTASKRTDAEGNITGVFFFLHVASPELQYALEMQRISEQATAENLHKLAYLRQEIQKPLDGIAFIQNLMGSSDLSKEQMRLLKLNTSSREQLHKIIHDTDIQSIEECYMETNCSEFNLGDVLDVVMNQNMILSQERGVKIICEPPTDVSSLHLYGDNMRLQQVLSEFLTNTLLFSCKESSVVFKATPRKERIGKGIHIVHLELRITHPAPGIPVHLIREMFDDNNDSSKEGLGLYISQKLLKIMNGTVQYLREAETSSFIILIEFPLVEHIAR 1121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3173623 3178180 - CrPI670011_02g006250.1 Cre02g0625 489906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0625 1121 FunFam Phytochrome 403 534 - -
Cre02g0625 1121 SMART gaf_1 219 408 IPR003018 GO:0005515(InterPro)
Cre02g0625 1121 Pfam PAS fold 71 186 IPR013654 GO:0006355(InterPro)
Cre02g0625 1121 Pfam GAF domain 222 397 IPR003018 GO:0005515(InterPro)
Cre02g0625 1121 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Cre02g0625 1121 CDD HATPase_Phy-like 1002 1113 IPR044767 -
Cre02g0625 1121 PANTHER OS08G0260000 PROTEIN 1 993 - -
Cre02g0625 1121 Gene3D - 403 576 IPR043150 -
Cre02g0625 1121 ProSiteProfiles Histidine kinase domain profile. 898 1117 IPR005467 -
Cre02g0625 1121 Gene3D PAS domain 761 872 - -
Cre02g0625 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Cre02g0625 1121 Pfam Phytochrome region 411 586 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre02g0625 1121 PIRSF Phytochrome_conventional 2 1121 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Cre02g0625 1121 SMART HKATPase_4 1003 1117 IPR003594 -
Cre02g0625 1121 CDD PAS 759 869 IPR000014 -
Cre02g0625 1121 FunFam Phytochrome 611 742 - -
Cre02g0625 1121 PRINTS Phytochrome signature 618 634 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre02g0625 1121 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre02g0625 1121 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre02g0625 1121 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre02g0625 1121 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre02g0625 1121 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre02g0625 1121 PRINTS Phytochrome signature 637 652 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre02g0625 1121 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre02g0625 1121 PRINTS Phytochrome signature 710 727 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre02g0625 1121 PRINTS Phytochrome signature 730 750 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre02g0625 1121 Gene3D - 934 1109 IPR036890 -
Cre02g0625 1121 SMART pas_2 617 683 IPR000014 -
Cre02g0625 1121 SMART pas_2 747 817 IPR000014 -
Cre02g0625 1121 ProSiteProfiles PAS repeat profile. 757 800 IPR000014 -
Cre02g0625 1121 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Cre02g0625 1121 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1003 1114 IPR003594 -
Cre02g0625 1121 SUPERFAMILY GAF domain-like 199 395 - -
Cre02g0625 1121 CDD PAS 626 732 IPR000014 -
Cre02g0625 1121 Gene3D - 200 559 IPR029016 -
Cre02g0625 1121 Gene3D PAS domain 74 322 - -
Cre02g0625 1121 SUPERFAMILY GAF domain-like 406 586 - -
Cre02g0625 1121 FunFam Phytochrome 956 1115 - -
Cre02g0625 1121 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 960 1111 IPR036890 -
Cre02g0625 1121 ProSiteProfiles PAS repeat profile. 615 685 IPR000014 -
Cre02g0625 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 762 866 IPR035965 -
Cre02g0625 1121 NCBIfam PAS domain S-box protein 622 736 IPR000014 -
Cre02g0625 1121 NCBIfam PAS domain S-box protein 762 868 IPR000014 -
Cre02g0625 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 624 735 IPR035965 -
Cre02g0625 1121 Gene3D PAS domain 603 746 - -
Cre02g0625 1121 Pfam PAS fold 758 869 IPR013767 GO:0006355(InterPro)
Cre02g0625 1121 Pfam PAS fold 618 732 IPR013767 GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0625 Cre-Chr2:3173623 Cre08g0848 Cre-Chr8:21571415 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0625 - - - 0.0