Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre02g0637 | ATGGGTCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTTCTGAATGTGATTCTTGTAAACGCTGCACTATCCATTTCCATGTTCAAATGCATTGTTCGTTTGATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCATCATTAGTCCCATCAACAGATCCCTTTGAAAGTTCCTCAGAGTTGGGAGATTCCAATTTTGGCTCCTCTTGGAGTTACCTCGAGATGTTTCGAAACCGATATCCAAGGATCCGATTTGATAAATTACAGGGCTCAGAATGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCTGAGATAAATCACTTATCTTGTGGTCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTAGATTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCCGAAGAAGAGAAATCGTGCTTTTGGTACAGCTTTCAGATTTTGGCACTCCTGCAACTTGGACAATCTGTGTAG | 510 | 42.94 | MGLSSLPAPSEGVLNVILVNAALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDPFESSSELGDSNFGSSWSYLEMFRNRYPRIRFDKLQGSECREHDCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFWYSFQILALLQLGQSV | 169 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 3302224 | 3303979 | - | CrPI670011_02g006370.1 | Cre02g0637 | 489918 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre02g0637 | 169 | SUPERFAMILY | RING/U-box | 93 | 146 | - | - | |
| Cre02g0637 | 169 | ProSiteProfiles | Zinc finger RING-type profile. | 99 | 141 | IPR001841 | - | |
| Cre02g0637 | 169 | PANTHER | - | 1 | 154 | IPR044249 | - | |
| Cre02g0637 | 169 | Pfam | Ring finger domain | 98 | 141 | IPR001841 | - | |
| Cre02g0637 | 169 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 146 | IPR013083 | - | |
| Cre02g0637 | 169 | SMART | ring_2 | 99 | 140 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre02g0637 | Cre-Chr2:3302224 | Cre02g1390 | Cre-Chr2:23192990 | 2.50E-54 | dispersed | |
| Cre02g0637 | Cre-Chr2:3302224 | Cre05g0222 | Cre-Chr5:2138930 | 8.50E-10 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre02g0637 | K16285 | - | csv:101215843 | 291.582 |