Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0639 ATGGCAATTGGCAAAGCACATGCCAAACCCCTTTTACCGATCTCTGTGTTGTGTGTTCTGGAAGCTAAGTCTATTTATTGTCGCCATGGTCCTCATGGGTCAGAATTGATTGTTCACGAAAGTTTTCTTCTCTTCCTCTTTATTCTCATGCCGAATAGCTTATGTGGATTTGTTGAGGGGGAAATCATGGGGTTTTGGCAATCTAGAAGGATTTCTAAGGGAAAGTTTCAAAGATCTGATTGCAGCATGGGTTACATTTGTGATTTCTGTGGGCAACAAAGGTCGATTGTGTACTGCCGATCCGATGCTGCAGCTTTGTGCTTGTCTTGTGACCGAAATGTTCATTCTGCCAACGCCTTGTCAAGGCGTCACTCGAGAACATTGTTATGTGATCGGTGCCATTCACAAGCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGACTATATGGGGCATAGCTCATCTGCCTCCATTTCGTCTCGAAAGAGGCAACCAATCAATTGTTACTCAGGCTGCCCGACAGCTGCAGAGCTCTCATCTATCTGGTCATTTGTTTTAGATCTCACTTCTGGAAGTGACGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCAGTAAATGCTTGGGGCCCTGATGATAAAGCTGGTCAAAATGTATCTGGTGTAGATGAAACCAATGAATTCTCAAGTGTGGATAAATCAATTTGGTATGGGTCCTCTTCAATGCCTCACATTATGGACCAACCCATTACTAGAGATGCAACTTCACCCAAGTTGCACTATCCTGGAACAAAAGGTCCTGAACTCGAAATTGAAGATGACCTCTACGAGACTTTGAATATGGATGAAGATAGTTTGAATATTGAAAACTATGAAGAACTATTTGGTGTATCTCTCAGTTATTCTGAAGAACTGCTAGAGAATGGTGGTATTGATAGTTTGTTCAGGTTGAAGAGCTTATCTGCCGCTAAATCTGGTTGCCCTGGTGCGGCTACTGCAGAGGGGGCGTCAGGCGGTTTTGTTAATAATGTGATGCAGCCTGCAAGCAGTAATGCAGCATCGGCAGATTCCGTGATGAGTTCGAAGACTGAACCGGTTCTTTGTTATAACAATAAGCAAGAGCACTCCAGCCTATCATTTTCTGGCATGACTGGAGAGAGTAGTGCAGGAGAACATCCAGACTGTGGAGCTTCATCAATGCTTCTAATGGGAGAACCTCCATGGTGTTCTATGACCACTGAGAGTTCCTTCCAGTCATCTAATCGTAGCGATGCTGTATTGCGCTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAAGTTAGGGCCGATACTCGAAGACGTGTCAAGGGACGCTTTGTCAAAGCTGGAGAAGCTTATGACTATGATCCTTTGAGTCAAACCAGAAGCTACTGA 1470 43.61 MAIGKAHAKPLLPISVLCVLEAKSIYCRHGPHGSELIVHESFLLFLFILMPNSLCGFVEGEIMGFWQSRRISKGKFQRSDCSMGYICDFCGQQRSIVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLTSGSDACEQELGLMSIAENSAVNAWGPDDKAGQNVSGVDETNEFSSVDKSIWYGSSSMPHIMDQPITRDATSPKLHYPGTKGPELEIEDDLYETLNMDEDSLNIENYEELFGVSLSYSEELLENGGIDSLFRLKSLSAAKSGCPGAATAEGASGGFVNNVMQPASSNAASADSVMSSKTEPVLCYNNKQEHSSLSFSGMTGESSAGEHPDCGASSMLLMGEPPWCSMTTESSFQSSNRSDAVLRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLSQTRSY 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3325642 3330659 - CrPI670011_02g006390.1 Cre02g0639 489920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0639 489 CDD Bbox1_BBX-like 86 129 IPR049808 -
Cre02g0639 489 SMART bboxneu5 82 129 IPR000315 GO:0008270(InterPro)
Cre02g0639 489 ProSiteProfiles CCT domain profile. 432 474 IPR010402 GO:0005515(InterPro)
Cre02g0639 489 Pfam CCT motif 432 474 IPR010402 GO:0005515(InterPro)
Cre02g0639 489 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 82 479 - -
Cre02g0639 489 ProSiteProfiles Zinc finger B-box type profile. 125 172 IPR000315 GO:0008270(InterPro)
Cre02g0639 489 ProSiteProfiles Zinc finger B-box type profile. 82 129 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0639 Cre-Chr2:3325642 Cre02g1391 Cre-Chr2:23341213 3.70E-122 dispersed
Cre02g0639 Cre-Chr2:3325642 Cre11g1658 Cre-Chr11:27879163 1.80E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53096 PF06203 CCT 8.00E-16 CL0281 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0639 - - - 0.0