Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0639 ATGGCAATTGGCAAAGCACATGCCAAACCCCTTTTACCGATCTCTGTGTTGTGTGTTCTGGAAGCTAAGTCTATTTATTGTCGCCATGGTCCTCATGGGTCAGAATTGATTGTTCACGAAAGTTTTCTTCTCTTCCTCTTTATTCTCATGCCGAATAGCTTATGTGGATTTGTTGAGGGGGAAATCATGGGGTTTTGGCAATCTAGAAGGATTTCTAAGGGAAAGTTTCAAAGATCTGATTGCAGCATGGGTTACATTTGTGATTTCTGTGGGCAACAAAGGTCGATTGTGTACTGCCGATCCGATGCTGCAGCTTTGTGCTTGTCTTGTGACCGAAATGTTCATTCTGCCAACGCCTTGTCAAGGCGTCACTCGAGAACATTGTTATGTGATCGGTGCCATTCACAAGCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGACTATATGGGGCATAGCTCATCTGCCTCCATTTCGTCTCGAAAGAGGCAACCAATCAATTGTTACTCAGGCTGCCCGACAGCTGCAGAGCTCTCATCTATCTGGTCATTTGTTTTAGATCTCACTTCTGGAAGTGACGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCAGTAAATGCTTGGGGCCCTGATGATAAAGCTGGTCAAAATGTATCTGGTGTAGATGAAACCAATGAATTCTCAAGTGTGGATAAATCAATTTGGTATGGGTCCTCTTCAATGCCTCACATTATGGACCAACCCATTACTAGAGATGCAACTTCACCCAAGTTGCACTATCCTGGAACAAAAGGTCCTGAACTCGAAATTGAAGATGACCTCTACGAGACTTTGAATATGGATGAAGATAGTTTGAATATTGAAAACTATGAAGAACTATTTGGTGTATCTCTCAGTTATTCTGAAGAACTGCTAGAGAATGGTGGTATTGATAGTTTGTTCAGGTTGAAGAGCTTATCTGCCGCTAAATCTGGTTGCCCTGGTGCGGCTACTGCAGAGGGGGCGTCAGGCGGTTTTGTTAATAATGTGATGCAGCCTGCAAGCAGTAATGCAGCATCGGCAGATTCCGTGATGAGTTCGAAGACTGAACCGGTTCTTTGTTATAACAATAAGCAAGAGCACTCCAGCCTATCATTTTCTGGCATGACTGGAGAGAGTAGTGCAGGAGAACATCCAGACTGTGGAGCTTCATCAATGCTTCTAATGGGAGAACCTCCATGGTGTTCTATGACCACTGAGAGTTCCTTCCAGTCATCTAATCGTAGCGATGCTGTATTGCGCTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAAGTTAGGGCCGATACTCGAAGACGTGTCAAGGGACGCTTTGTCAAAGCTGGAGAAGCTTATGACTATGATCCTTTGAGTCAAACCAGAAGCTACTGA 1470 43.61 MAIGKAHAKPLLPISVLCVLEAKSIYCRHGPHGSELIVHESFLLFLFILMPNSLCGFVEGEIMGFWQSRRISKGKFQRSDCSMGYICDFCGQQRSIVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLTSGSDACEQELGLMSIAENSAVNAWGPDDKAGQNVSGVDETNEFSSVDKSIWYGSSSMPHIMDQPITRDATSPKLHYPGTKGPELEIEDDLYETLNMDEDSLNIENYEELFGVSLSYSEELLENGGIDSLFRLKSLSAAKSGCPGAATAEGASGGFVNNVMQPASSNAASADSVMSSKTEPVLCYNNKQEHSSLSFSGMTGESSAGEHPDCGASSMLLMGEPPWCSMTTESSFQSSNRSDAVLRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLSQTRSY 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3325642 3330659 - CrPI670011_02g006390.1 Cre02g0639 489920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0639 489 CDD Bbox1_BBX-like 86 129 IPR049808 -
Cre02g0639 489 SMART bboxneu5 82 129 IPR000315 GO:0008270(InterPro)
Cre02g0639 489 ProSiteProfiles CCT domain profile. 432 474 IPR010402 GO:0005515(InterPro)
Cre02g0639 489 Pfam CCT motif 432 474 IPR010402 GO:0005515(InterPro)
Cre02g0639 489 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 82 479 - -
Cre02g0639 489 ProSiteProfiles Zinc finger B-box type profile. 125 172 IPR000315 GO:0008270(InterPro)
Cre02g0639 489 ProSiteProfiles Zinc finger B-box type profile. 82 129 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0639 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0639 Cre-Chr2:3325642 Cre02g1391 Cre-Chr2:23341213 3.70E-122 dispersed
Cre02g0639 Cre-Chr2:3325642 Cre11g1658 Cre-Chr11:27879163 1.80E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g737 . Blo15g00433 . . Bpe12g00169 Bpe15g00764 Bma03g00658 Bma08g00690 . Cmo19g00853 Cma02g00242 Cma20g00703 . . . Cpe15g00673 Cpe04g00659 Bhi05g01505 . . Lac12g0415 Hepe02g0327 . . Cla02g00307 Cam02g0316 Cec02g0317 Cco02g0319 Clacu02g0307 Cmu02g0306 Cre02g0639 Cone3ag1271 . Cone8ag1358 Cone12ag1303 . Csa07g00235 Chy11g00733 Cme01g00573 . Blo13g00448 Bda14g00661 . . Bpe07g00668 Bma02g01294 Bma12g00873 . Cmo02g00244 . . Cma19g00837 Car11g01444 Car19g00649 . Cpe05g01383 Bhi10g01288 . . . Hepe08g0372 . . . . . . . . . Lsi11g01330 Csa06g00975 Chy01g00545 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1331 . 6 337 C2C2-CO-like Transcription Factor Family AT5G15850 50.6 1.8e-41 167.2
Cre08g1331 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.7 3.9e-84 308.9
Cre06g2174 . 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 51.2 3.6e-58 222.6
Cre06g2174 . 1 375 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 5.0e-68 255.4
Cre08g1331 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 5.3e-54 208.8
Cre02g1391 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.2 1.1e-89 327.4
Cre02g0639 . 83 489 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 1.8e-89 326.6
Cre02g1391 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 1.7e-87 320.1
Cre02g0639 . 83 489 C2C2-CO-like Transcription Factor Family AT5G48250 55.0 5.5e-86 315.1
Cre02g1391 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 1.7e-87 320.1
Cre02g0639 . 83 489 C2C2-CO-like Transcription Factor Family AT5G48250 55.0 5.5e-86 315.1
Cre02g0833 . 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 55.2 1.8e-51 200.3
Cre11g0890 . 1 184 C2C2-CO-like Transcription Factor Family AT1G75540 52.5 1.5e-42 170.6
Cre07g1378 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.3 3.4e-76 282.3
Cre07g1192 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 1.0e-55 213.4
Cre04g1625 . 1 107 C2C2-CO-like Transcription Factor Family AT2G21320 81.3 6.2e-48 187.6
Cre07g1192 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 7.0e-58 220.7
Cre04g1625 . 1 107 C2C2-CO-like Transcription Factor Family AT4G38960 82.2 1.3e-48 189.9
Cre02g0833 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 60.9 1.7e-56 216.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53096 PF06203 CCT 8.00E-16 CL0281 Cre TF