Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0647 ATGGACAAGAAAGCAAAAAAGGGCGATAGGCCATCTGAATCTTCATGGGGTCTGGAATTTCCCATTGCCATATCACAAATCTATGGCTCTGTTTCACTTTCATGCGGTCTTCTTTGGAGCAGATATTTCTGTTCACCAATGAAAATGATGAACCGGACAAATTTCATACTTACATTTTGTACACATGCAAGAGAAAAAGATCAGAAAATGGATGAGAAGAGAGAAACCAAAGAGCCATCAAGCTCTAATCTCTCATCTTCTGCTCATCAAATCAGGCCTACAGAGAAGAGGACACCAATTGAAGTCTTTCAAGTGCCTGCAAGTTCTGGAGATGGCCATTCCAAGGGGGAGAGTGATGCGATTCATGAGCAGGATGAGGCAAAATCATCCCTCTCTTCCTTTCGTCCTGCTGCCAGCATGGAAGCATCCAGAAAGTGGATGGCATTTGAAAATGAAAACTTTAATATAACAGAAACGTACACAAAGAACTTCAGTGGTAGCTTTGGGTCATATTCTACTGAACTCTTGGAAACAAACATAACAAAAAGGACTGCAGAGGAGAACAAGATTGATCGTTTATCATCGCTGCAACTGACATATGTGATCTCAGATGCAACAAAACCAGATTGCCCCATCGTGTTTGCCAGCAATAGGTTCTTGGTTATGACTGGCTATACACTGGAGGAGGTCATTGGAAGGAACTGCCGGTTTCTTCAAGGACCAGAAACAGATAAGAATGAAGTCGCCAAAATACGAGATGCAATTAGAAAGGGGAATAGTTACTGTGGCAAGCTCTTGAACTACAAGAAGAATGGTACTCCTTTCTGGAATCTTCTCACTGTTGGGCCTGTCAAAGATTCCCATGGCAACATCATCAAATTTATTGGAATGCAGGTTGAGATCGCCAAAAATACAGAAGAAAAAGAGAGAACCATGAAGTCCATGTCCATTACAGAGCTCCAAGCTGTGAAAAGTCTAAGATCTCACATTCAGTCAAAAAGGCAGGATGCTGATACAAAGCACGAAGAGCCAGAAATGACTGATGCTGATTATGCTCTGTACAAGGCTCTGGATATTGATGAGAATATTAGCACATCTGATAACCAAAAGGCTCGGTTCAAAGAAAGGACTCTAGGTTCTGCAGTAGAACGTGAAGAAAAGACAGTTGTTGAGGCATCTGTTTTCAAGCCCAGGGATGGTGATTGTGTTGCTAAAAGAGAAAGGGACATATGTCAAGGAATTGAGTTGGCTACCACATTGGAACGGATTGAGAAGATATTTTTTATCACTAACCCAAGACTTCCTGATAATCCTATTATATTCGCATCTCATAGGTTTCTTGATTCTACAGAATACTCATGTGAAGAAATTCTGGGGAGAAACTTTTGGTTTCTTCAGGGACCTGAAACAGATCAAGCAACTGTCTCAAAGATAAACAATGCAATTGAAGAGCAGAGAGAAATCACTCTTCAGATAATCAACTATACAAAGAGTGTCACACTTTCTTCTCAGCGACAATTAGTCTCGCTCTCCTCTCAAGTTAGGGCTTCCATCGTCTCTTCTTCCACTCTCTCCTCTCAAGCTAAAGGGGAGCTTCAATATTTCATTGCGGCGCAACTTCATCTAAAACCTTCAAGAGGCTGGCTTTTAGATCAAACGGAGCATGAAAGTGCTAAGCTGGCCAAAGCTGTAGCTGAGAATGTTGACAAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAAACCAAAGAACTTCTGGGCAATCTACTGCCAGCCAGTCTTGCCAAGGCCTCACAAGAAGTACAGTCCTTCCTGGATAGCCATACAAAAGATTACCAGTCATGGTGAAAAGATTGGACTCCATCATTTTAAGCCAATAAGACCTCTGGGTTTTGGAGACATTGGCAGTGTTCATCTCGTACAACTAAATGGAACAGGTGAACTCTTTGCTATGAAGGCTATAGAAAAGTCAGTAATATTAAATCGAAACAAGGTTCATCGAGCATGCATGGAAAGGGAAATCATATCACTTCTGGATCATCCTTTCATGCCAACACTGTACTCTTCATTTCAGACGCCTACGCACATTTTTCTTATTATGGACTTCTGCCCCGGTGGAGAGTTATTTACATTTCTTGACAAGCAGCCAATGAAAATGTTTAAAGAGGAAGCTGCTAGGTTCTATGCTGCAGAAGTTGTCATTGCTTTGGAGTATCTTCACTGTTTAGGTATTATCTACAGGGACCTAAAACCCGAAAATATTCTACTCCAGAAAGATGGACATATCATCCTCACTGATTTTGATTTATCGTTTAAGACGTCTAGCATACAAACCATAGAATCTTCAACCCCAAGAAAGAAGACATGTAGGCATAAATCACTGCCGATGGTCGTCGTTGAACCTATGGTAGAACTGAATTCATTCATTGGAACTGAAGAGTACATTGCCCCAGAGATCATAATGGGTGCAGGCCATGGTAGTTCTATTGACTGGTGGACTCTAGGTATCTTATTGTATGAAATGCTCTATGGTCGCACTCCCTTCAAAGGCAAAAACAGGAATAAAACTTTTGCCAATATTTTGTGCAAGGACTTGACCTTCCCCATTAGTATTCAGGCAAGTCTTGCAGCAAAACAACTGATTGATGCACTACTACAGAGAGACCCTGCACGTCGTCTAGGATCGAGGACCGGTGCTGATGAAATCAAACGACATCCATTTTTCCGTCAAATAAATTGGCCTAAAATTCGAACCATGGAGTCGCGCGCGGGTGAGGATGTTAGTGGTGTCGGTGGTGGGTTGAAGGTAGAGGAGTCGCCAGTGGTGGGGAAGCCGGAAGTGGAGTCGGTGATTTTTTTTGCCGGAGTCTCGAATTTGAAGCTCAATTGA 2889 42.26 MDKKAKKGDRPSESSWGLEFPIAISQIYGSVSLSCGLLWSRYFCSPMKMMNRTNFILTFCTHAREKDQKMDEKRETKEPSSSNLSSSAHQIRPTEKRTPIEVFQVPASSGDGHSKGESDAIHEQDEAKSSLSSFRPAASMEASRKWMAFENENFNITETYTKNFSGSFGSYSTELLETNITKRTAEENKIDRLSSLQLTYVISDATKPDCPIVFASNRFLVMTGYTLEEVIGRNCRFLQGPETDKNEVAKIRDAIRKGNSYCGKLLNYKKNGTPFWNLLTVGPVKDSHGNIIKFIGMQVEIAKNTEEKERTMKSMSITELQAVKSLRSHIQSKRQDADTKHEEPEMTDADYALYKALDIDENISTSDNQKARFKERTLGSAVEREEKTVVEASVFKPRDGDCVAKRERDICQGIELATTLERIEKIFFITNPRLPDNPIIFASHRFLDSTEYSCEEILGRNFWFLQGPETDQATVSKINNAIEEQREITLQIINYTKSVTLSSQRQLVSLSSQVRASIVSSSTLSSQAKGELQYFIAAQLHLKPSRGWLLDQTEHESAKLAKAVAENVDKAVRELPDANLKPKNFWAIYCQPVLPRPHKKYSPSWIAIQKITSHGEKIGLHHFKPIRPLGFGDIGSVHLVQLNGTGELFAMKAIEKSVILNRNKVHRACMEREIISLLDHPFMPTLYSSFQTPTHIFLIMDFCPGGELFTFLDKQPMKMFKEEAARFYAAEVVIALEYLHCLGIIYRDLKPENILLQKDGHIILTDFDLSFKTSSIQTIESSTPRKKTCRHKSLPMVVVEPMVELNSFIGTEEYIAPEIIMGAGHGSSIDWWTLGILLYEMLYGRTPFKGKNRNKTFANILCKDLTFPISIQASLAAKQLIDALLQRDPARRLGSRTGADEIKRHPFFRQINWPKIRTMESRAGEDVSGVGGGLKVEESPVVGKPEVESVIFFAGVSNLKLN 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3412628 3426147 + CrPI670011_02g006470.1 Cre02g0647 489928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0647 962 Pfam PAS domain 434 499 IPR000014 -
Cre02g0647 962 Pfam PAS domain 206 301 IPR000014 -
Cre02g0647 962 FunFam Putative LOV domain-containing protein 707 920 - -
Cre02g0647 962 Gene3D PAS domain 401 575 - -
Cre02g0647 962 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Cre02g0647 962 ProSitePatterns Serine/Threonine protein kinases active-site signature. 744 756 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g0647 962 SMART pas_2 414 483 IPR000014 -
Cre02g0647 962 SMART pas_2 187 256 IPR000014 -
Cre02g0647 962 PANTHER FLIPPASE KINASE 1-RELATED 453 920 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cre02g0647 962 CDD PAS 212 301 IPR000014 -
Cre02g0647 962 Gene3D PAS domain 200 357 - -
Cre02g0647 962 SUPERFAMILY Protein kinase-like (PK-like) 600 919 IPR011009 -
Cre02g0647 962 ProSiteProfiles Protein kinase domain profile. 623 908 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g0647 962 Gene3D Transferase(Phosphotransferase) domain 1 707 920 - -
Cre02g0647 962 ProSiteProfiles PAS repeat profile. 185 258 IPR000014 -
Cre02g0647 962 SUPERFAMILY PYP-like sensor domain (PAS domain) 427 498 IPR035965 -
Cre02g0647 962 ProSiteProfiles PAC domain profile. 259 313 IPR000700 -
Cre02g0647 962 CDD STKc_phototropin_like 621 920 - -
Cre02g0647 962 NCBIfam PAS domain S-box protein 212 309 IPR000014 -
Cre02g0647 962 MobiDBLite consensus disorder prediction 68 135 - -
Cre02g0647 962 SUPERFAMILY PYP-like sensor domain (PAS domain) 206 299 IPR035965 -
Cre02g0647 962 Gene3D Phosphorylase Kinase; domain 1 622 706 - -
Cre02g0647 962 Pfam Protein kinase domain 626 908 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g0647 962 SMART serkin_6 623 908 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g0647 962 MobiDBLite consensus disorder prediction 115 129 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0647 Cre-Chr2:3412628 Cre02g2374 Cre-Chr2:37143370 2.80E-222 dispersed
Cre05g0703 Cre-Chr5:6210763 Cre02g0647 Cre-Chr2:3412628 2.40E-33 transposed
Cre06g2529 Cre-Chr6:32935047 Cre02g0647 Cre-Chr2:3412628 1.80E-57 transposed
Cre02g0647 Cre-Chr2:3412628 Cre02g1369 Cre-Chr2:21989427 1.60E-254 wgd
Cre02g0647 Cre-Chr2:3412628 Cre04g1741 Cre-Chr4:35499566 8.30E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63850 PF00069 Pkinase 5.90E-63 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0647 K20715 - csv:101213364 1454.88