Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0653 ATGGATAATGAGGTGATTGAATTTGATATTGGATTGGGAGGAGGGAGTGGGAGGGAGGGAGATGACTACTCTATGGGTATTGTGCATCATGCCATTGAGGATGACGAAATGGTTGATAGCCCTCCTCTCAGCAGTCTTGGTGGTGGTGCTGGCAGTGGTGAGATATATCTTCCTGAGGGTGATCTTTTGGATCTTGAACCTTATGATGGAATGGAATTTGAGTCTGAAGAAGCTGCCAAGGCTTTCTATAATTCATATGCTCGGCGTGTTGGGTTTAGTACTCGTGTCAGCTCCTCCCGTCGGTCTAGGCGTGATGGAGCGATTATACAAAGGCAATTTGTTTGTGCCAAAGAGGGTTTTAGGAATATGAATGAGAAGCGAACTAAAGACAGAGAAATTAAGCGTCCTCGAACCATCACAAGAGTAGGTTGCAAAGCATCCTTGTCTGTAAAGATGCATGATTCTGGGAAATGGGTTGTATCTGGATTTGTTAGAGAGCATAATCATGAGTTAGTTCCTCCTGACCAGGTGCACTGCTTGCGGTCTCATAGGCAAATATCAGGTCCAGCAAAGACCTTAATTGATACTTTACAGGCTGCTGGGATGGGTCCTCGTAGGATTATGTCGGCACTGATAAAGGAGTATGGAGGAATCAGTAAAGTTGGATTTACAGAGGTGGATTGTCGAAATTATATGAGGAATAATCGCCAAAGGAGCTTAGAAGGAGACATTCAACTGCTTTTGGATTACTTGAGGCAAATGCATTCTGAAAATCCTAACTTCTTCTATGCTGTTCAGGGTGAGGAGGATCAGTGTGTGGGCAATGTCTTTTGGGCCGATCCAAAAGCTCGGATGAACTATACTTACTTTGTAATACAGTCAGCCATCACACAAGTTTTCCCTGAGACCCGTCACCGTTTCTGCAAATGGCATATTTTCAAGAAATGCCAGGAGATGCTGTCTCATGTGTTTCTTAAACACCCAAGCTTTGAAGCTGACTTCCACAAATGTGTAAACTTGACTGACTCTATCGAGGAATTTGAGTCCTGCTGGCTGTCACTTGTTGACAGATACGATCTCAGGGATCATGAGTGGCTTCAGACAATTTACTCTGCTCGGAGGCAGTGGGTTCCTGTATATTTGCGGGACACTTTTTTTGCCGAAATGTCGATTACACAGCGAAGTGATAGCATGAATTCTTATTTTGATGGATATGTGAATGCTTCGACCAATTTGAGTCAGTTCTTTAAACTGTATGAAAAAGCTTTAGAGAGTCGGAATGAGAAGGAAGTGAAAGCAGATTATGATACGATGAACACTTCCCCTGTTCTAAAGACTCCATCTCCAATGGAAAAACAGGTTTCTGAGCTTTACACCAGGAAGCTGTTCTCAAGGTTCCAAGAGGAGTTAGTTGGCACACTAACTTTTATGGCTTCGAAAGCTGATGATGATGGGGAAATTATAACATATCAAGTGGCCAAATTTGGAGAGGATCATAAAGCTCACTATGTGAAATTTAATGTTTTGGAGATGAGAGCAAGTTGTAGTTGCCAGATGTTTGAGTTCTCAGGTCTTCTGTGCAGACATATCTTGGCTGTCTTCAGAGTGACCAATGTTCTTACACTTCCATCTTACTACATATTGAAACGATGGACAAGAAACGCAAAAAGTAATGTGATATTGGAGGACCATGTGAATGATATCTATAACAACTATCTTGAATCTCATACTGTGAGATACAATACCCTGCGCCACGAGGCTTTTAAATTTATAGAGGAAGGAGCAAAGACTCTGGATATGTATAATGTGGCTAAACATGCCCTTCAGGAGGCTGCTAAAAGGGTTGCTCATACGACGAGGAATGATGGCAAAATTTCTACAATCAATGGGCGAATTAAAGTGGACCCTGTAAATGTCAGAAGCTATAAAAATCACAGTGGTAGCAGGGATCATGACGAGAGCTTGAGTAAAAACATGTCTGAGGATGACTTGGACAAGAAAATCAATGAACTTACTAATGAATTGGCGTGTGCGAATCGGAAGTGTGAAGTTTATCGGTCTAATCTTTTTTCAGTGCTGAAAGACATTGAGGACCACAAGTTGCAATTATCTATAAAAGTGCAGAACATAAAAATTAGTATGAAAGACAGCATTTGA 2157 41.72 MDNEVIEFDIGLGGGSGREGDDYSMGIVHHAIEDDEMVDSPPLSSLGGGAGSGEIYLPEGDLLDLEPYDGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRTKDREIKRPRTITRVGCKASLSVKMHDSGKWVVSGFVREHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLLLDYLRQMHSENPNFFYAVQGEEDQCVGNVFWADPKARMNYTYFVIQSAITQVFPETRHRFCKWHIFKKCQEMLSHVFLKHPSFEADFHKCVNLTDSIEEFESCWLSLVDRYDLRDHEWLQTIYSARRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTNLSQFFKLYEKALESRNEKEVKADYDTMNTSPVLKTPSPMEKQVSELYTRKLFSRFQEELVGTLTFMASKADDDGEIITYQVAKFGEDHKAHYVKFNVLEMRASCSCQMFEFSGLLCRHILAVFRVTNVLTLPSYYILKRWTRNAKSNVILEDHVNDIYNNYLESHTVRYNTLRHEAFKFIEEGAKTLDMYNVAKHALQEAAKRVAHTTRNDGKISTINGRIKVDPVNVRSYKNHSGSRDHDESLSKNMSEDDLDKKINELTNELACANRKCEVYRSNLFSVLKDIEDHKLQLSIKVQNIKISMKDSI 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3462888 3466095 - CrPI670011_02g006530.1 Cre02g0653 489934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0653 718 Pfam SWIM zinc finger 510 535 IPR007527 GO:0008270(InterPro)
Cre02g0653 718 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 291 617 IPR031052 GO:0006355(InterPro)
Cre02g0653 718 Pfam FAR1 DNA-binding domain 82 173 IPR004330 -
Cre02g0653 718 Coils Coil 661 688 - -
Cre02g0653 718 ProSiteProfiles Zinc finger SWIM-type profile. 506 538 IPR007527 GO:0008270(InterPro)
Cre02g0653 718 SMART 26again6 513 540 IPR006564 GO:0008270(InterPro)
Cre02g0653 718 MobiDBLite consensus disorder prediction 641 661 - -
Cre02g0653 718 MobiDBLite consensus disorder prediction 644 661 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0653 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0653 Cre-Chr2:3462888 Cre07g1458 Cre-Chr7:29689094 2.60E-100 dispersed
Cre03g1694 Cre-Chr3:33689192 Cre02g0653 Cre-Chr2:3462888 8.90E-131 transposed
Cre07g2006 Cre-Chr7:35597851 Cre02g0653 Cre-Chr2:3462888 2.20E-26 transposed
Cre09g0738 Cre-Chr9:7228085 Cre02g0653 Cre-Chr2:3462888 3.20E-22 transposed
Cre09g0766 Cre-Chr9:7530884 Cre02g0653 Cre-Chr2:3462888 2.90E-29 transposed
Cre10g1838 Cre-Chr10:32938189 Cre02g0653 Cre-Chr2:3462888 7.50E-28 transposed
Cre02g0653 Cre-Chr2:3462888 Cre02g1378 Cre-Chr2:22389221 6.30E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g320 . . . . . . . . . . . Cma20g00708 . Car20g00607 . . . . . . . . . . Cla02g00322 Cam02g0331 Cec02g0331 Cco02g0335 Clacu02g0321 Cmu02g0320 Cre02g0653 . . Cone3ag1258 . . . . . . . . . . . . . . . Cmo20g00702 . . Car11g01433 . Cpe16g00358 . . . . . . . . Cla02g01052 Cam02g1123 Cec02g1127 Cco02g1163 Clacu02g1110 Cmu02g1074 Cre02g1378 Lsi11g01315 . . Cme11g01021
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53098 PF03101 FAR1 5.10E-34 CL0274 Cre TF