Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0660 ATGACGCACGACGAGCTCGAACCTATAATGGCTACTTTAGGCTTCATCGCCCTAGAACCAGCCGTCAACGGCGCCGGAATCTCCTGGAAATCCTATAAATACTCCGCCGCTGATTGCCGCACCAAGTCGGTTTCTCCGTCGCCGCCAACACCGCGACTGCCGTATCCGAGAATCGACGGTCTTCACATTTATACATACAGAGCATTTCTTGATGCCGTCAATTTTTATCTCGAGAAATTTGATATCTCCGATCTCTTCCATATTAGGGGATTGCCATTGTATCGAAACCATGATCGGAATAGGAAGTGGCGTCGAATGGACGAAGAAGGTGGTAATTTTGTTTACAGAGAAGGGACTCTCGATCAAACCACACTCAATTTATATAACTTTCATAAGAATTGCCAAAATAACAAGGGATACAAAAGGATTGATAGTACTACAAGTGATGAAGAACATGACGACCGTGGAAAAATGATTGAAGACAATACAAATGAAGATTCCATATGCATTGTTAGTTTGAAAGATGTTGTTGGGCATTCGGTTCTTAAAGCTAAACGTAGACGCTTTGTGCATATCAACAGTCGTTGTCTTTTGAATTTGGAGGGCTTCTTCAAGGCTTTATGTTCTTCTGAAATGGCTGCTTTTGTAGCTATAATAGTCTTCTATTTGGTTCTTCTGCAAACACCCACCAACATATTTGCGGTTAAGGATGAAGAAGAGTGGAAATCTGCTACTGCAACATACTCCAAAGAAACAGATGGGTCAATTGTTACAGAAGGTGCTTGTGGTTATGGAGATCTGCATAAGATAAGCTATGGAAAATATAGCGCTGGACTGAGTAGCATGTTGTTTAATAGAGGGAGTACCTGTGGAGCTTGCTATGAGCTTAGATGTGTTGACCACATCTTGTGGTGCTTGCAAGGAAGCCCGACTGTCATTCTAACGGCCACCGACTTCTGTCCTCCCAATTACGGCTTCTCTTCCGATTATGGTGGTTGGTGTAATTTTCCCAAGGAACACTTTGAGATGTCAGAGGCAGCGTTTGCTGAAATAGCAGAGAAAAAAGCAGATATTGTGCCAGTTCAATATAGGAGGGTGAGGTGTGACAGAAGTGGTGGAATGAGATTCACAGTTAGTGGGAATTCTCGTTTCTTTCAAGTGCTGATTACAAATGTTGGAATGGATGGTGAATTAGTGGCAGTCAAAGTAAAAGGATCAAGAACAGGATGGATACCACTGGCAAGAAACTGGGGACAAAACTGGCAAAGCAATGTCAATCTTCATGGACAACCTCTCTCTTTTGAAGTTACCTCCAGCAGTGGAAGAGCACTTACTTCCTACAGTGTTGCACCTGGAAACTGGCAGTTTGGGCAGACATTTGAAGGGAAACAATTTTGA 1398 42.99 MTHDELEPIMATLGFIALEPAVNGAGISWKSYKYSAADCRTKSVSPSPPTPRLPYPRIDGLHIYTYRAFLDAVNFYLEKFDISDLFHIRGLPLYRNHDRNRKWRRMDEEGGNFVYREGTLDQTTLNLYNFHKNCQNNKGYKRIDSTTSDEEHDDRGKMIEDNTNEDSICIVSLKDVVGHSVLKAKRRRFVHINSRCLLNLEGFFKALCSSEMAAFVAIIVFYLVLLQTPTNIFAVKDEEEWKSATATYSKETDGSIVTEGACGYGDLHKISYGKYSAGLSSMLFNRGSTCGACYELRCVDHILWCLQGSPTVILTATDFCPPNYGFSSDYGGWCNFPKEHFEMSEAAFAEIAEKKADIVPVQYRRVRCDRSGGMRFTVSGNSRFFQVLITNVGMDGELVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYSVAPGNWQFGQTFEGKQF 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3552998 3564090 - CrPI670011_02g006600.1 Cre02g0660 489941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0660 465 Gene3D - 227 369 IPR036908 -
Cre02g0660 465 CDD DPBB_EXPA_N 240 368 - -
Cre02g0660 465 SMART dpbb_1 276 363 IPR007112 -
Cre02g0660 465 SUPERFAMILY Barwin-like endoglucanases 240 391 IPR036908 -
Cre02g0660 465 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 383 462 IPR007117 -
Cre02g0660 465 Gene3D - 373 465 IPR036749 -
Cre02g0660 465 Pfam Expansin C-terminal domain 374 451 IPR007117 -
Cre02g0660 465 PANTHER EXPANSIN-A15 216 465 IPR002963 GO:0009664(InterPro)
Cre02g0660 465 Pfam Lytic transglycolase 277 363 IPR009009 -
Cre02g0660 465 PRINTS Expansin/Lol pI family signature 258 276 IPR007118 GO:0005576(InterPro)
Cre02g0660 465 PRINTS Expansin/Lol pI family signature 280 298 IPR007118 GO:0005576(InterPro)
Cre02g0660 465 PRINTS Expansin/Lol pI family signature 356 372 IPR007118 GO:0005576(InterPro)
Cre02g0660 465 PRINTS Expansin/Lol pI family signature 410 424 IPR007118 GO:0005576(InterPro)
Cre02g0660 465 PRINTS Expansin/Lol pI family signature 448 462 IPR007118 GO:0005576(InterPro)
Cre02g0660 465 PRINTS Expansin/Lol pI family signature 240 255 IPR007118 GO:0005576(InterPro)
Cre02g0660 465 SUPERFAMILY PHL pollen allergen 370 462 IPR036749 -
Cre02g0660 465 PRINTS Expansin signature 372 384 IPR002963 GO:0009664(InterPro)
Cre02g0660 465 PRINTS Expansin signature 384 405 IPR002963 GO:0009664(InterPro)
Cre02g0660 465 PRINTS Expansin signature 298 309 IPR002963 GO:0009664(InterPro)
Cre02g0660 465 PRINTS Expansin signature 348 361 IPR002963 GO:0009664(InterPro)
Cre02g0660 465 PRINTS Expansin signature 312 322 IPR002963 GO:0009664(InterPro)
Cre02g0660 465 PRINTS Expansin signature 448 464 IPR002963 GO:0009664(InterPro)
Cre02g0660 465 PRINTS Expansin signature 331 348 IPR002963 GO:0009664(InterPro)
Cre02g0660 465 PRINTS Expansin signature 271 285 IPR002963 GO:0009664(InterPro)
Cre02g0660 465 PRINTS Expansin signature 419 440 IPR002963 GO:0009664(InterPro)
Cre02g0660 465 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 259 373 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0660 Cre-Chr2:3552998 Cre09g1686 Cre-Chr9:34701851 2.10E-74 dispersed
Cre02g0660 Cre-Chr2:3552998 Cre03g0457 Cre-Chr3:3010152 2.30E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0660 - - - 0.0