Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0670 ATGAGTATGGTTTGGCTTCTTTTAGTACTTGTTTGTATTCAAGGAATTTCAGAAGGGGCCTCAAGAAATGAAGTAGTGAAAGTTGGAGCTATATTTTCACTTAGTTCTGTCAATGGGAAAGTTTCCAAGATTGCCATTGAAGCTGCTGAGAAAGATGTGAATTCTGATCCAAGTGTTCTTGGAGGAAGAAAGCTATCTATTTCCATATATGATGCAAATTATAGTGGATTTCTTGGTATCACAGGAGCAATGAAGTACATGGTGTCTGACACAGTTGCTATCCTTGGTCCACAAGATTCTACGATGGCTCATACACTCTCACATCTTTCTAATGAACTCCATATCCCGTTACTCTCATTTACAGCATTGGACCCAACACTTTCAACTTTGCAATATCCATACTTCATTCAAACAGCTCCAAATGATCAATTCCAAATGACTGCAATTGCTGATATGATTCATTATTATGGTTGGCATGACGTCGTTGTGGTTTTCACCGACGACGATCAATGTCGAAACAGTATGATTGAATTAGGTGATAAACTTGAAGAGAGAAGCTTGAAAATTTCCTCTAAAGTGCCACTCCCCCCTTACCCAACAGCAACAAGAACTCAAGTTCAAGATGCATTGGTAAAGATCAAAATGATGGAATCTCGAGTAATCGTATTGTACACGTTTTCGAAAACCGGTTTCTTGGTTTTCGAAGTGGCTCAAAGCCTTAGAATGATGGGAGCTGGTTATGTTTGGATAACCTCTAGTTGGCTATCAACAGTAATAGATTCTACTTCACCACTTCCTTTGAAAATTGCCAACTCCATCCAAGGAGTTCTTACTCTTCGTCTACACACACCCGATTCGAAAATGAAACGATCTTTTATATCGAGATGGAACAAGCTGAGCAATGGCTCCTCAATTGGGTTGAATACGTATGGCCTATATGCTTATGATACTGTTTGGATGGTTGCAAGAGGAGTGAAAAAGTTATTGGATCAAAATGGAACTATCTCATTCTCCAAAGTTACAAATGCTGGTAATCTTAGTGGAGAGACTTTGGATTTTAGTTCATTGGGAATCTTTAATGAAGGAAATGATTTGCTTAACTATTTATTGAATATCAGTATGACTGGTTTAACAGGGCCTATTAAGTTTCTAGATAAATCCCCTTTACATCCTTCATATGATATCTTAAATGTAGTGAAATCTGGTATGCAGAGAATCGGATATTGGTCTAACTATTCCGGTTTATCTGTCGTGGCGCCCGAAACGTTGTATGGCAAAGCAATTAATCGTTCTATGTTAACCGAACAGTTAAGCAGCACAAGGTGGCCTGGGGGATTGACAACAAAGCCTCGTGGTTGGGTTCTACCGCTCGATGGAAGGCGGCTAAGAATCGGCGTTCCACGCAGAGTTAGTTATCAGGAATTCGTGACACCGGGAAATGGAAATGGTACAATCAAAGGATACTGCATTGATGTGTTCACTGCTGCTGTCAACTTGCTTCCATATGCAGTTACTTATGAGTTCATTTTGTTTGGAGATGGTGAGAAGAATCCTAGCTACCTTGAGCTTGTAAATAAAGTTGCATTGAAAGAATTTGATGCTGCTGTTGGTGACATTGCCATTGTGACTAGTCGGACAAGGATCGTCGATTTTACACAGCCTTATATCGACTCGGGGCTAGTAGTTCTGGCCCCTGCAAAGAAGTTGAATTCAAGTCCTTTGGCATTCCTTCGCCCATTCACACCAATGATGTGGGCTGTCACAGCAGCATTTTTCTTCCTCATTGGATTAGTTGTGTGGATGTTGGAACATCGGAAAAACGACGAATTTCGAGGGCATCCTAGGACGCAAATCGTCACAATCCTCTGGTTTGGCTTCTCTACTATGTTTTTTGCACAAAGAGAAAACGTCGTGAGCACGCTCGGTCGTTTCGTGATAGTCGTGTGGCTTTTTGTGGTTCTAATTATCAACTCAAGCTACACCGCTAACCTGACATCGATATTCACAGTACAACTAGCCACCTCATCTATCACAGGAATCGATTCATTGATATCTAGCAATGTGCATATAGGATTCCAAGTTGGTTCATTTGCTGAAAGTTATTTAAGTGAGCAACTTAATGTCCAAAAGTCTAGGCTCATTGCTCTTGGATCCCCAGAAGAGTATGCTGCCGCTCTCAAGAACGGAACGGTCGGTGCTATTGTCGACGAGCAACCATACATCGATCTCTTTCTCACCGAGTATTGCGATTATTTGATAAGGGGCCAACAGTTCACCAAAAGTGGATGGGGATTTGCATTTCCACGAGACTCTCCATTGGCGGTAGACTTATCGACCGCCATACTCACACTCTCAGAGAACGGCCATCTTCAGAAGATTCACGACAAGTGGTTCTCAAGAAAATCTTGCAGTTCAGGAGATTCCGATCTAAATTCAGAGCAACTTCACTTGCAGAGCTTCATCGGATTGTTCTCCATTTGTGCCGGCGTGTGTTTGTTCGCTCTTTTGCTTCATTTTTTCTTGACCGTGTGTCAATTCAACCGCCATTTGAAGCAAGATCCAGAAGCTTCGACCACCGGTACCGGTGGCGATGGCGGTGGCGGTGGCGGTTCCTGCCCTACGGCGCTGCGAAATTTCTTTTCGTTTGCAGATAAGAAGAAGGAAAGAAAGACGAGCTATTCGAAGAGGAAGGTCGAAGATACATTCTCGAGTGAACGTGGAGAGGATTAG 2730 42.27 MSMVWLLLVLVCIQGISEGASRNEVVKVGAIFSLSSVNGKVSKIAIEAAEKDVNSDPSVLGGRKLSISIYDANYSGFLGITGAMKYMVSDTVAILGPQDSTMAHTLSHLSNELHIPLLSFTALDPTLSTLQYPYFIQTAPNDQFQMTAIADMIHYYGWHDVVVVFTDDDQCRNSMIELGDKLEERSLKISSKVPLPPYPTATRTQVQDALVKIKMMESRVIVLYTFSKTGFLVFEVAQSLRMMGAGYVWITSSWLSTVIDSTSPLPLKIANSIQGVLTLRLHTPDSKMKRSFISRWNKLSNGSSIGLNTYGLYAYDTVWMVARGVKKLLDQNGTISFSKVTNAGNLSGETLDFSSLGIFNEGNDLLNYLLNISMTGLTGPIKFLDKSPLHPSYDILNVVKSGMQRIGYWSNYSGLSVVAPETLYGKAINRSMLTEQLSSTRWPGGLTTKPRGWVLPLDGRRLRIGVPRRVSYQEFVTPGNGNGTIKGYCIDVFTAAVNLLPYAVTYEFILFGDGEKNPSYLELVNKVALKEFDAAVGDIAIVTSRTRIVDFTQPYIDSGLVVLAPAKKLNSSPLAFLRPFTPMMWAVTAAFFFLIGLVVWMLEHRKNDEFRGHPRTQIVTILWFGFSTMFFAQRENVVSTLGRFVIVVWLFVVLIINSSYTANLTSIFTVQLATSSITGIDSLISSNVHIGFQVGSFAESYLSEQLNVQKSRLIALGSPEEYAAALKNGTVGAIVDEQPYIDLFLTEYCDYLIRGQQFTKSGWGFAFPRDSPLAVDLSTAILTLSENGHLQKIHDKWFSRKSCSSGDSDLNSEQLHLQSFIGLFSICAGVCLFALLLHFFLTVCQFNRHLKQDPEASTTGTGGDGGGGGGSCPTALRNFFSFADKKKERKTSYSKRKVEDTFSSERGED 909
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3645098 3650843 - CrPI670011_02g006700.1 Cre02g0670 489951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0670 909 FunFam Glutamate receptor 573 703 - -
Cre02g0670 909 Gene3D - 573 714 - -
Cre02g0670 909 Gene3D - 141 415 - -
Cre02g0670 909 SMART GluR_14 463 800 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cre02g0670 909 FunFam Glutamate receptor 699 802 - -
Cre02g0670 909 SUPERFAMILY Periplasmic binding protein-like I 20 453 IPR028082 -
Cre02g0670 909 PIRSF IGluLR_plant 1 903 IPR017103 -
Cre02g0670 909 FunFam Glutamate receptor 141 299 - -
Cre02g0670 909 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 26 891 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cre02g0670 909 FunFam Glutamate receptor 457 573 - -
Cre02g0670 909 CDD GluR_Plant 460 798 - -
Cre02g0670 909 Pfam Receptor family ligand binding region 43 400 IPR001828 -
Cre02g0670 909 SUPERFAMILY Periplasmic binding protein-like II 440 800 - -
Cre02g0670 909 Gene3D - 44 390 - -
Cre02g0670 909 Gene3D - 456 572 - -
Cre02g0670 909 Pfam Ligand-gated ion channel 800 830 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cre02g0670 909 Pfam Bacterial extracellular solute-binding proteins, family 3 472 583 IPR001638 -
Cre02g0670 909 Gene3D - 740 805 - -
Cre02g0670 909 MobiDBLite consensus disorder prediction 886 909 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0670 Cre-Chr2:3645098 Cre02g1193 Cre-Chr2:11430267 4.60E-251 dispersed
Cre11g2281 Cre-Chr11:34516349 Cre02g0670 Cre-Chr2:3645098 8.60E-275 wgd
Cre02g0670 Cre-Chr2:3645098 Cre04g1716 Cre-Chr4:35311216 1.80E-279 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0670 K05387 - csv:101208602 1565.44