Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0682 ATGAATGCACATATCAACTCCGTCTCCATTGCCAGTAGTAGCAGCTCTCCTCTCGATCTCGCCATTCCTTTTGAACTTCAAATGATCGAAACTACAACGTCTCTCGACTCCAATCGCCGCCGTCCTCGCAAGAAACGGTCAAGAATAGAAAAAGACTCCACCGTCACCACTGCCGCCGTCTCTTCCAAGGCTAAGTATAGCAAGAAACCCGATCCTAATGCACCCAAGATCACTCCTCCATGTACTGAGTGTGGGAAGAGATTTTGGTCAGATAAAGCGCTTTTCGGTCACATGAGGTGTCATCCTGAACGTCAATGGCGGGGAATTAATCCGCCTCTTAATTTCCGTCGTTCGATTTCTGTTTCTCCTTTTAGCCCTAATATCGCTACTGATTTAGAAGACTCTTCGTTTACTGAAGAAGATCAAGACATTGCTAATTGCTTGCTAATGCTTGCGAATAGCCCTAATTCGATTTCTAGGGTTTCCGATTGTCGATTCGAATGCTCGAGTTGTAAGAAAGTGTTTGGATCGCATCAAGCGCTTGGTGGACATAGGGCAAGTCATAAGAATGTGAGAGGCTGTTTCGCTATCGCAAAGAGCGATGAAGAAACAGAAGATGAAATTACTCTGTTTGGCCATGACAGGAGTATCAATCTGGAGAATAGAATGTCGATGATGATTTTAGGAACAGCAGAGCATAAATGTAGTGGCCACAAGAGATTCCATTGGGAGAATAATGCAGCTGCAGAAGAAGGTTTTGTTAATTTGGACTTGAACATGCCTGCTCCTCTTGAAGATGGTTCATCTTCTTCATATTCTTCAAGCCTCACTCTGGATCTCAGGTTGGGCCTTTGA 855 44.44 MNAHINSVSIASSSSSPLDLAIPFELQMIETTTSLDSNRRRPRKKRSRIEKDSTVTTAAVSSKAKYSKKPDPNAPKITPPCTECGKRFWSDKALFGHMRCHPERQWRGINPPLNFRRSISVSPFSPNIATDLEDSSFTEEDQDIANCLLMLANSPNSISRVSDCRFECSSCKKVFGSHQALGGHRASHKNVRGCFAIAKSDEETEDEITLFGHDRSINLENRMSMMILGTAEHKCSGHKRFHWENNAAAEEGFVNLDLNMPAPLEDGSSSSYSSSLTLDLRLGL 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3789111 3789965 - CrPI670011_02g006820.1 Cre02g0682 489963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0682 284 ProSitePatterns Zinc finger C2H2 type domain signature. 168 188 IPR013087 -
Cre02g0682 284 MobiDBLite consensus disorder prediction 34 74 - -
Cre02g0682 284 SUPERFAMILY beta-beta-alpha zinc fingers 80 188 IPR036236 -
Cre02g0682 284 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 33 282 - -
Cre02g0682 284 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Cre02g0682 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 193 IPR013087 -
Cre02g0682 284 Gene3D Classic Zinc Finger 39 193 - -
Cre02g0682 284 SMART c2h2final6 166 188 IPR013087 -
Cre02g0682 284 SMART c2h2final6 79 101 IPR013087 -
Cre02g0682 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Cre02g0682 284 Pfam C2H2-type zinc finger 165 189 IPR013087 -
Cre02g0682 284 Pfam C2H2-type zinc finger 81 103 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0682 Cre-Chr2:3789111 Cre05g0091 Cre-Chr5:1136671 2.10E-13 dispersed
Cre02g1348 Cre-Chr2:19634304 Cre02g0682 Cre-Chr2:3789111 4.70E-24 transposed
Cre02g0682 Cre-Chr2:3789111 Cre04g1708 Cre-Chr4:35259616 1.70E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53099 PF13912 zf-C2H2_6 6.90E-10 CL0361 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0682 - - - 0.0