Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0683 ATGGCTTCCATCCATACTTTTTCTTCTCGCTTTTTAATCTGCGGTTTTCGTTATCGTTTCGGGGTTTTCGATGTTTCTTCTGGGATAGGCGAGCACCGGGTTGATGGCGTTGGTGAAGAAGGAGGAGTTAGTGTTACAGTTAACATTCGATGTTCTAATGGGTCGAAATTTTCGGTGACGACGAGTCTAGATTCCACGGTTGGGACATTCAAATCAATTCTTGCTCAGAATTGTGATATTCCAGCTGATCAACAGCGCTTGATCTACAAGGGTCGCATCTTAAAGGACGATCAGACCTTAGTTAGTTATGGTTTACAGGCAGATCACACGATTCACATGGTTCGTGGTTTTGCCCAAGCTTCATCAACACCTCCTGCGCCTGCTTCTAATGTTAATAGTAGAAGTTCTGACACTGCTTCTGGTGTCACAAGAGGTGTTGGTTCTAATGAGAGTGGTGCTTTTGGAAATGCTGGCCTTGGTGCATCATTATTTCCTGGATTGGGTTTCAATCCTCTCGGTGGGGGTGGAGCTGGACTTCCTGAGTTTGAGCAAGTGCAACAACAGTTGACTCAGAATCCAAATATGATGAGGGAAATAATGAACATGCCTGCAATTCAGAACTTGATGAATAACCCTGACTTGATGCGAACCTTAATTATGAGCAATCCTCAGATGCGGGATATTATTGACAGGAACCCAGAGCTTGCTCATATACTCAATGACCCTGGAATCCTTCGACAGACATTAGAGGCTGCAAGGAATCCTGAACTCATGAGAGAGATGATGAGAAACACTGACAGAGCAATGAGTAACATCGAATCTTCTCCAGAGGGATTTAACATGCTGAGGCGGATGTATGAAAATGTTCAGGAGCCATTTCTAAATGCAACAACAATGGCTGGAAATGCTGGAAATGATTTGAGTTCAAACCCATTTGCTGCTCTCTTGGCAAACCAAGGGGGTGCACAAGCGAGGAATGAGTCCAATAATTCTTCAACTACAGGATCAGAAACAACAGGAACTGCTGCTCCGAATACAAATCCACTTCCTAATCCGTGGGGTAATAGTGCTCGTGGAGGAACTCAGACCACAACCACACAGCCTACTCCAGCAGGTGATGCAAGGGCTCCTGGTATTGGGGCTTTAGGAGGGGCTGGTCGTACAAATGTGGATCGATTTGCTGGTGCTGTGCCAGATCCGGCTCAGCTGAACCAGTTTCTGCAAAACCCAGCTATTTCACAGATGATGCAGAGCCTACTCTCCAACCCTCAGTATATGAATCAAATCCTCAATCTCAACCCACAGCTACGAAGTATGGTTGATATGAATCCTCAATTAAGAGAGATGATGCAAAATCCAGAGTTTGTTCGCCAATTAACTAATCCTGAGATGATGCAGCAAATGCTATCGATCCAGCAGACCCTCCTCTCTACCTTAAATCGGCAGCCATCATCTCAAGATTCTGCTCAAACAGGTGCTGCTGCAGGTGTTCCTAGCACTGCTGGATTGGAGATGTTAATGAACCTCTTTGGTGGGCTCGGTGCTGGTGGGTTGGCTGTTCCGAACAATCCCAACGTGCCCCCAGAAGAACTATACGCAACTCAACTCTCACAGCTCCAAGAGATGGGTTTCTTTGACACCCAAGAGAACATCAGAGCTCTACGGGCTACTTCCGGGAACGTTCATGCCGCTGTCGAGCGACTGCTGGGAAATCTCGGGCATTCTTTGATGAAATTGAACATTCTTTCTGATCCTAAAGACGGCCGCAAAGATTTCGCCGTGATAAGATACGCCGAATCGAAGAATCGACCTGCCGTTCAAGGAACGCCGGCGAGTCGCCGCAGCGGTGGACGATACGCTGACGGGACGCACGGGACTCCGAAGTCACGTGCCTTCCCCGTGCTTCTGCTGCACAGTTCCCTAGGGTTTATTCCCGATTCGGGTAAGAAATCCCCCTCTTTCGTCTTTCTGACCAATCAGTTGGATGAAGCTCTACGGCGTCGTTTATTGACTATTCTGTCGTTCTGTGGTTCTGTTTTCTTCGTGATTCTCATGTATCTCATTAGTATTTTTGAAACTTTGATTTCCATTTCTCCTCCTCGCCTTTCTTCCATTTGGGTTTGCGGAGTTGACTCAGTTTCCTTCTTCGGTGAGAGTAGTTGTGGCTTCGGTACCCTTTGGCTATACAGCTGTAAAGTGAAGATATTGACTTGTTTCAACATATCAATGACCTACACACCTCCAACATGGGCGACATTAGCTGCTGCTGCATTTGTTATTCTGACTCTTATCCTTTCACTATATCTATTGTTCGAGCACCTTTCTGCATATAAGAATCCGGAGGAGCAAAAGTTTTTGATTGGTGTTATCCTAATGGTCCCAACTTATGGTGTAGAATCGTTTGTATCATTGGTGTACCCATCAATAAGTGTTTATCTTGAGATACTGCGCGATTGCTATGAATCCTTCGCAATGTACTGCTTTGGACGATACCTGGTTGCTTGCTTGGGTGGGGAAGAAGGGACTATTGAATTTCTAGAGAGAGAAGGACGTTCAAATACTAAGACGCCTTTATTAGAACATAGCTCAGAAAAGGGAACCATCAAACATGTTTTCCCTATGAACCTGTTTTTAAAGCCGTGGAAAATTGGTGGATGGGTTTACCATGTTATCAAAATTGGAATCGTCCAATATATGATGATAAAGTCCCTCACTTCTATTTTAGCTGTAGTTCTTGAGGACTTTGGCGTTTATTGTGAAGGAGACTTTAATTTCAAATGCGGGTATCCTTATATGGCAGTGGTTTTAAATTTCAGTCAATCATGGGCACTATACTGCCTGATTCAGTTCTATACAGTCACAAAGGATGAATTGGTACATATAAAGCCATTGGCCAAATTTTTGATGTTTAAATCTATAGTATTTTTGACTTGGTGGCAAGGTGTTGGAATTGCTCTCCTATCTGCCTTCGATTTGTTCAGGAGTCCTGTAGCCCAAGGGTTACAGTTTAAGTCAAGTGTCCAAGATTTCATCATTTGTATAGAGATGGCCGTTGCTTCTGTGATTCACTTGTATGTATTTCCTGCAAAACCTTATGAACTTATGGGGGACCGTTATCCTGGAAGTGTTTCTGTTCTTGGCGATTATGCATCTGTCGACTGTCCTTTAGATCCAGATGAGGTCAAGGATAGTGAGCGTCCTACAAAGTTACGCCTACCCCAGCCTGACCTTGAAGACCAAGACCCCAAGATGGGAATGACAATCAAAGAGAGTGTCCGAGATGTTTTTGTTGGTGGTGGGGGCTATATTGTGAGCGACCTGAAATTCACAGTAAACCAAGCAGTTGAACCTGTGGAAAAAGGAATAACAAAGTTCAATGAAAAACTACAGAAGCTCTCCCAAAACATGAAGAAACGTGACAAGGATAAAAGAAGAACCAAGGATGACAGTTGTATTACGTCGCCCACACGAAAAGTCATTCGAGGAATCGATGATCCCCTTCTGAATGGTAGCTTTAGTGATAGTGGGGTTGTAAGGGAAAAGAAGAACCGTCGTAAATCCGGTTATATAAGTGCAGAAAGTGGCGGAGAAAGCAGCAGTGATTACGGTTATGGCAAGTACCAAGTCGGGGGCCGCCGGTGGATCACTAAAGACTAG 3657 44.68 MASIHTFSSRFLICGFRYRFGVFDVSSGIGEHRVDGVGEEGGVSVTVNIRCSNGSKFSVTTSLDSTVGTFKSILAQNCDIPADQQRLIYKGRILKDDQTLVSYGLQADHTIHMVRGFAQASSTPPAPASNVNSRSSDTASGVTRGVGSNESGAFGNAGLGASLFPGLGFNPLGGGGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRTLIMSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDLSSNPFAALLANQGGAQARNESNNSSTTGSETTGTAAPNTNPLPNPWGNSARGGTQTTTTQPTPAGDARAPGIGALGGAGRTNVDRFAGAVPDPAQLNQFLQNPAISQMMQSLLSNPQYMNQILNLNPQLRSMVDMNPQLREMMQNPEFVRQLTNPEMMQQMLSIQQTLLSTLNRQPSSQDSAQTGAAAGVPSTAGLEMLMNLFGGLGAGGLAVPNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGHSLMKLNILSDPKDGRKDFAVIRYAESKNRPAVQGTPASRRSGGRYADGTHGTPKSRAFPVLLLHSSLGFIPDSGKKSPSFVFLTNQLDEALRRRLLTILSFCGSVFFVILMYLISIFETLISISPPRLSSIWVCGVDSVSFFGESSCGFGTLWLYSCKVKILTCFNISMTYTPPTWATLAAAAFVILTLILSLYLLFEHLSAYKNPEEQKFLIGVILMVPTYGVESFVSLVYPSISVYLEILRDCYESFAMYCFGRYLVACLGGEEGTIEFLEREGRSNTKTPLLEHSSEKGTIKHVFPMNLFLKPWKIGGWVYHVIKIGIVQYMMIKSLTSILAVVLEDFGVYCEGDFNFKCGYPYMAVVLNFSQSWALYCLIQFYTVTKDELVHIKPLAKFLMFKSIVFLTWWQGVGIALLSAFDLFRSPVAQGLQFKSSVQDFIICIEMAVASVIHLYVFPAKPYELMGDRYPGSVSVLGDYASVDCPLDPDEVKDSERPTKLRLPQPDLEDQDPKMGMTIKESVRDVFVGGGGYIVSDLKFTVNQAVEPVEKGITKFNEKLQKLSQNMKKRDKDKRRTKDDSCITSPTRKVIRGIDDPLLNGSFSDSGVVREKKNRRKSGYISAESGGESSSDYGYGKYQVGGRRWITKD 1218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3795630 3810576 + CrPI670011_02g006830.1 Cre02g0683 489964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0683 1218 MobiDBLite consensus disorder prediction 122 147 - -
Cre02g0683 1218 SMART uba_6 532 570 IPR015940 -
Cre02g0683 1218 FunFam Ubiquitin domain-containing protein DSK2b 42 129 - -
Cre02g0683 1218 ProSiteProfiles Ubiquitin domain profile. 45 114 IPR000626 GO:0005515(InterPro)
Cre02g0683 1218 SUPERFAMILY Ubiquitin-like 44 131 IPR029071 -
Cre02g0683 1218 SUPERFAMILY UBA-like 528 570 IPR009060 GO:0005515(InterPro)
Cre02g0683 1218 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 527 571 IPR015940 -
Cre02g0683 1218 MobiDBLite consensus disorder prediction 1132 1151 - -
Cre02g0683 1218 MobiDBLite consensus disorder prediction 1056 1082 - -
Cre02g0683 1218 Gene3D - 43 128 - -
Cre02g0683 1218 Gene3D - 514 575 - -
Cre02g0683 1218 MobiDBLite consensus disorder prediction 1178 1218 - -
Cre02g0683 1218 FunFam Ubiquitin domain-containing protein DSK2b 219 275 - -
Cre02g0683 1218 FunFam Ubiquitin domain-containing protein DSK2b 515 573 - -
Cre02g0683 1218 Pfam Organic solute transporter Ostalpha 752 1032 IPR005178 -
Cre02g0683 1218 PANTHER UBIQUILIN 41 570 IPR015496 GO:0005829(PANTHER)|GO:0006511(PANTHER)|GO:0031593(PANTHER)
Cre02g0683 1218 MobiDBLite consensus disorder prediction 319 371 - -
Cre02g0683 1218 MobiDBLite consensus disorder prediction 119 147 - -
Cre02g0683 1218 Gene3D - 217 274 - -
Cre02g0683 1218 SMART Solute_trans_a_2 751 1032 IPR005178 -
Cre02g0683 1218 CDD Ubl_Dsk2p_like 45 117 - -
Cre02g0683 1218 SMART CBM 222 261 IPR006636 -
Cre02g0683 1218 SMART CBM 433 468 IPR006636 -
Cre02g0683 1218 SMART CBM 400 429 IPR006636 -
Cre02g0683 1218 SMART CBM 170 209 IPR006636 -
Cre02g0683 1218 Pfam Ubiquitin family 47 115 IPR000626 GO:0005515(InterPro)
Cre02g0683 1218 MobiDBLite consensus disorder prediction 605 625 - -
Cre02g0683 1218 Coils Coil 1122 1142 - -
Cre02g0683 1218 SMART ubq_7 45 116 IPR000626 GO:0005515(InterPro)
Cre02g0683 1218 CDD UBA_PLICs 532 570 - -
Cre02g0683 1218 Pfam UBA/TS-N domain 532 568 IPR015940 -
Cre02g0683 1218 MobiDBLite consensus disorder prediction 319 385 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0683 K04523 - - csv:101210644 919.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0683 Cre-Chr2:3795630 Cre10g0292 Cre-Chr10:1823235 4.00E-133 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g279 . . . . . Bpe12g00146 . . Cmo19g00812 Cmo11g01781 . . . . . . Cpe15g00635 Bhi05g01598 . . . . . . Cla02g00356 Cam02g0364 Cec02g0365 Cco02g0372 Clacu02g0356 Cmu02g0353 Cre02g0683 . . . . . Csa07g00177 . Cme01g01155 . Blo13g00478 . . . . . Bma08g00721 . . . Cma11g01338 . Car11g01409 Car19g00608 . . . . . . . . . . . . . . . . Lsi11g01278 . Chy01g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007981 0 8 1 1 1 1 2 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 0 1 0 1 1 1 35