Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0709 ATGGCTTGGTTTCTTGGTTCTCTCTTTCTCTTTTTCATTTCTTCTGCTAATGCTTGTGATCGTTGTGTTTATCAATCTAAAGCTAGCCACCTTTATGATTCACCTACAACATATGGAGGGGCATGTGGTTATGGCAATGTGGCCTTGCAATTCTCTAATGGCTTCTTTGCAGCTGCTGTGCCTTCCCTTTATAGACAAGGAGCTGGTTGTGGTGCTTGCTATCAGGTGAGATGCAAAAACAGAAGGCTTTGTAACACCGTAGGGGCTAAAGTGGTATTGACAGATCAAAATAACGATAACGTGACAGATCTTGTTCTTAGTAAAAGAGCTTTCTATACAATGGCTTTAAATGGCAAAGGTGCAGACCTGTTGAATCTTGGAGTTGTTGATGTTGAATATAAGAGGGTGCCTTGCGAATACAAATATAAGAATTTGTTGGTGCAAGTGGAAGAAGCAAGTTATAATCCATTTTACTTGGCTATTAAATTCTTGTACCAAGGTGGCCAAACAGATATAGTAGCTGTGGACATAGCTCAAGTAGGCACCTCTGATTGGAGCCATATGAACAGAAATTATGGAGCTGTCTGGGAAACTAACAACATACCTGAAGGAGCATTACAATTGAGGATGGTAGTGACTTCTGGATACGATGGAAAGTGGGTTTGGGCAAAATCCGTACTTCCTGCTAATTGGAAAAGTGGAGCGATTTACGATACTGGAGTTCAAATCAACGATGTTGCGAAAGAGAGTTGCCCTCCATGGCAATGTGGTGATAACCTATGGAAATGA 789 41.19 MAWFLGSLFLFFISSANACDRCVYQSKASHLYDSPTTYGGACGYGNVALQFSNGFFAAAVPSLYRQGAGCGACYQVRCKNRRLCNTVGAKVVLTDQNNDNVTDLVLSKRAFYTMALNGKGADLLNLGVVDVEYKRVPCEYKYKNLLVQVEEASYNPFYLAIKFLYQGGQTDIVAVDIAQVGTSDWSHMNRNYGAVWETNNIPEGALQLRMVVTSGYDGKWVWAKSVLPANWKSGAIYDTGVQINDVAKESCPPWQCGDNLWK 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3978745 3980848 - CrPI670011_02g007090.1 Cre02g0709 489990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0709 262 Pfam Lytic transglycolase 58 133 IPR009009 -
Cre02g0709 262 SUPERFAMILY Barwin-like endoglucanases 11 141 IPR036908 -
Cre02g0709 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Cre02g0709 262 PANTHER EXPANSIN-B3 10 245 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cre02g0709 262 SUPERFAMILY PHL pollen allergen 143 238 IPR036749 -
Cre02g0709 262 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576(InterPro)
Cre02g0709 262 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Cre02g0709 262 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Cre02g0709 262 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576(InterPro)
Cre02g0709 262 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576(InterPro)
Cre02g0709 262 CDD DPBB_EXLA_N 14 140 - -
Cre02g0709 262 Gene3D - 140 244 IPR036749 -
Cre02g0709 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Cre02g0709 262 Pfam Expansin C-terminal domain 147 228 IPR007117 -
Cre02g0709 262 Gene3D - 13 139 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0709 Cre-Chr2:3978745 Cre02g0711 Cre-Chr2:3990405 1.40E-141 dispersed
Cre02g0708 Cre-Chr2:3971385 Cre02g0709 Cre-Chr2:3978745 3.80E-97 tandem
Cre02g0709 Cre-Chr2:3978745 Cre02g0710 Cre-Chr2:3984314 5.20E-91 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0709 - - - 0.0