Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre02g0711 | ATGGCTTGGTTTCTTAGCTTTCTCTTTCTCTTTTTCATCTCTTCTGCTAATGCTTGTGATCGATGTGTTTTCCAATCTAAAGCTAGTCACCTTTATGAATCACCCACTACATATGGGGGAGCATGTGGCTATGGCAACTTGGCATTGCAGTTCTCCAATGGCTTCTTTGCAGCTGCTGTGCCTTCTCTTTATAAACAAGGAGCTGGTTGTGGGGCTTGCTATCAAGTAAGGTGCAAAAATAGAAGGCTTTGCAATACAGTAGGAACTAAGGTGGTATTGACAGATCAAAACAATGACAATGTAACAGACCTTGTTCTTAGTCCAAAGGCTTTCTTTACCATGGCTCTCAATGGTAAAGGTTCAGATCTTTTGAATCTTGGGGTGGTTGATGTTGAATATAAGAGGGTGGCATGTGAATATCCAAATAGAAATTTGTTGGTGAGAGTGGAAGAATCAAGTTACAACCCATTCAAGTTAGCAATTAAATATTTGTACCAAGGTGGTCAAACAGACATGGTTGCTGTTGATATAGCTCAAGTTGGAACCTCAGATTGGAGCCATATGAAGAGAAGTTATGGAGCTGTTTGGGAAACAGACAATGTACCTGAAGGTGCATTACAATTGAGAATGGTGGTAACTTCTGGCTACGACGGCAAATGGGTTTGGGCAAAGTCCGTACTTCCTGCTAATTGGAGAGCTGGGGCGATCTACGATACTGGAGTCCAAATCAACGATGTTGCCAAAGAGAGTTGCCCTCCTTGGCAATGTGGTGATGCGCAATGGAAATAA | 789 | 42.21 | MAWFLSFLFLFFISSANACDRCVFQSKASHLYESPTTYGGACGYGNLALQFSNGFFAAAVPSLYKQGAGCGACYQVRCKNRRLCNTVGTKVVLTDQNNDNVTDLVLSPKAFFTMALNGKGSDLLNLGVVDVEYKRVACEYPNRNLLVRVEESSYNPFKLAIKYLYQGGQTDMVAVDIAQVGTSDWSHMKRSYGAVWETDNVPEGALQLRMVVTSGYDGKWVWAKSVLPANWRAGAIYDTGVQINDVAKESCPPWQCGDAQWK | 262 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3990405 | 3991932 | - | CrPI670011_02g007110.1 | Cre02g0711 | 489992 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre02g0711 | 262 | SUPERFAMILY | Barwin-like endoglucanases | 11 | 142 | IPR036908 | - | |
Cre02g0711 | 262 | Gene3D | - | 140 | 244 | IPR036749 | - | |
Cre02g0711 | 262 | Gene3D | - | 13 | 139 | IPR036908 | - | |
Cre02g0711 | 262 | PRINTS | Expansin/Lol pI family signature | 60 | 78 | IPR007118 | GO:0005576(InterPro) | |
Cre02g0711 | 262 | PRINTS | Expansin/Lol pI family signature | 185 | 199 | IPR007118 | GO:0005576(InterPro) | |
Cre02g0711 | 262 | PRINTS | Expansin/Lol pI family signature | 126 | 142 | IPR007118 | GO:0005576(InterPro) | |
Cre02g0711 | 262 | PRINTS | Expansin/Lol pI family signature | 38 | 56 | IPR007118 | GO:0005576(InterPro) | |
Cre02g0711 | 262 | PRINTS | Expansin/Lol pI family signature | 225 | 239 | IPR007118 | GO:0005576(InterPro) | |
Cre02g0711 | 262 | SUPERFAMILY | PHL pollen allergen | 143 | 238 | IPR036749 | - | |
Cre02g0711 | 262 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 39 | 143 | IPR007112 | - | |
Cre02g0711 | 262 | PANTHER | EXPANSIN-B3 | 8 | 245 | - | GO:0009505(PANTHER)|GO:0009506(PANTHER) | |
Cre02g0711 | 262 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 157 | 239 | IPR007117 | - | |
Cre02g0711 | 262 | Pfam | Lytic transglycolase | 58 | 133 | IPR009009 | - | |
Cre02g0711 | 262 | Pfam | Expansin C-terminal domain | 147 | 228 | IPR007117 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g0709 | Cre-Chr2:3978745 | Cre02g0711 | Cre-Chr2:3990405 | 1.40E-141 | dispersed | |
Cre02g0711 | Cre-Chr2:3990405 | Cre02g0714 | Cre-Chr2:4000850 | 5.90E-111 | dispersed | |
Cre02g0710 | Cre-Chr2:3984314 | Cre02g0711 | Cre-Chr2:3990405 | 1.20E-89 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre02g0711 | - | - | - | 0.0 |