Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0713 ATGGAAAGAGGAAAAACAAGAATGTATTATTGGTTCCTCACCTTCCTCTTCTTGCTCGTCTCCTCTACTACGGCTTCTTTTCCTCCTTGTAATCGTTGTGTTCGTCAATCCAAAGCTGCTCATTACTATCAAGATTCACCTACTTCATATGGAGGTGCTTGTGGTTATGCAAATTTAGCATTGCAAATCTCTCAAGGCTACTTTGCAGCTGCTGTCCCTTCCCTTTATAAGGGAGGAGCAGGTTGTGGCGCTTGCTACCAGGTAAGATGCAAGGACAAACATCTATGCAATACTGCAGGGACTAAAATAGTTTTGACAGATCAAAATAATGATAATAGAACAGATATTGTTCTTAGTAAGAAAGCTTTCTCTGCAATGGCTTTAAGAGGAAAAGCTCAACAACTTTTGAATACTGGACTCGTGGATGTAGAATACAAGAGGATACCTTGTGAATACAAAAATAAAAATCTATTGGTACAAGTGGTAGAATGGAGCAAAAAACCATACTATTTGGCAATCAAATTCCTATATCAAGGAGGTCAAACAGACATACAAGCGGTTAACATAGCTCAGGTGGGTTTACCAAAATGGCGCCCTATGAAAAGAAATTATGGACCTATTTGGGATATTAAGAGTGTGCCTGAAGGAGGATTACAATTGAGAATGGTAGTAAGTTCAAGATATGATAATGGGAAATGGATTTGGGCAGGTTTTGTGATCCCAGCTGATTGGAAAAATGGTGAAATTTATGATACTGGAGTTCAAATTAATGATATTGCTTTTGAATATTGCCCTCCTTGGCAATGTGATGATGGACAATGGAAATAA 828 38.29 MERGKTRMYYWFLTFLFLLVSSTTASFPPCNRCVRQSKAAHYYQDSPTSYGGACGYANLALQISQGYFAAAVPSLYKGGAGCGACYQVRCKDKHLCNTAGTKIVLTDQNNDNRTDIVLSKKAFSAMALRGKAQQLLNTGLVDVEYKRIPCEYKNKNLLVQVVEWSKKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRPMKRNYGPIWDIKSVPEGGLQLRMVVSSRYDNGKWIWAGFVIPADWKNGEIYDTGVQINDIAFEYCPPWQCDDGQWK 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3996642 3998119 - CrPI670011_02g007130.1 Cre02g0713 489994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0713 275 Gene3D - 22 151 IPR036908 -
Cre02g0713 275 SUPERFAMILY PHL pollen allergen 162 251 IPR036749 -
Cre02g0713 275 PANTHER EXPANSIN-B3 15 258 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cre02g0713 275 Pfam Expansin C-terminal domain 166 241 IPR007117 -
Cre02g0713 275 Pfam Lytic transglycolase 70 145 IPR009009 -
Cre02g0713 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 155 IPR007112 -
Cre02g0713 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 252 IPR007117 -
Cre02g0713 275 CDD DPBB_EXLA_N 30 152 - -
Cre02g0713 275 SUPERFAMILY Barwin-like endoglucanases 25 154 IPR036908 -
Cre02g0713 275 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576(InterPro)
Cre02g0713 275 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576(InterPro)
Cre02g0713 275 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576(InterPro)
Cre02g0713 275 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
Cre02g0713 275 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Cre02g0713 275 Gene3D - 152 257 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0710 Cre-Chr2:3984314 Cre02g0713 Cre-Chr2:3996642 5.00E-96 dispersed
Cre02g0713 Cre-Chr2:3996642 Cre02g0716 Cre-Chr2:4016487 2.40E-102 dispersed
Cre02g0713 Cre-Chr2:3996642 Cre02g0714 Cre-Chr2:4000850 8.70E-105 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0713 - - - 0.0