Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0714 ATGGCTTGGTTCCTTAGCTTATTCTTCTTCTTCCTCATCTCTTCTGCTACTGCTTGCGATCGTTGTATTCATCGATCCAAAGCTACTCATTATTATGGAGATTCACCTACTTCATATGGAGGAGCATGTGGGTATGGAGACTTGGCATTGGAATTTACCAATGGCTACTTTTCAGCTGCTGTGCCTTCTCTCTACAAACAAGGAGCTGGTTGTGGTGCATGTTTTCAGGTAAGATGTAAAGACAAAAGACTATGCAATACAGCAGGGACCAAAGTAGTATTGACAGATCAAAATTATGATACAAGAGCAGATTTTGTTCTAAGTAGAAAGGCTTTTTCAGCCATGGCTTTGAAAGGAAAAGGTCAACAACTTTTGAATACTGGGATTGTTGATGTAGAATACAAGAGGATACCTTGTGGATACAAAAACAAAAATTTGGCCGTACGAGTTGAAGAATCAAGTTATAATCCAAATTATTTAGCCATTAAACTTTTGTACCAAGGTGGCCAAACAGAGATAGTGGCTGTCGAGATAGCTGAGGTTGGTTCATACGAATGGGTGAGCTTAAGCAGAAACTATGGAGCAGTTTGGGATACAAATAAAGTACCCAAAGGAGCATTACAAATGAGAATGGCATTTACTTCAGGATACGATGGAAAATGGGTTTGGGCAGAATATGTTCTTCCTGTTGATTGGAAAATTGGAGCCATTTACGATACTGGAGTTCAAATTTATGATATTGCTAAAGAGGGTTGCCTTGCATCACAGTGTGGTGATAAACCATGGAAATAA 792 39.14 MAWFLSLFFFFLISSATACDRCIHRSKATHYYGDSPTSYGGACGYGDLALEFTNGYFSAAVPSLYKQGAGCGACFQVRCKDKRLCNTAGTKVVLTDQNYDTRADFVLSRKAFSAMALKGKGQQLLNTGIVDVEYKRIPCGYKNKNLAVRVEESSYNPNYLAIKLLYQGGQTEIVAVEIAEVGSYEWVSLSRNYGAVWDTNKVPKGALQMRMAFTSGYDGKWVWAEYVLPVDWKIGAIYDTGVQIYDIAKEGCLASQCGDKPWK 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4000850 4003660 - CrPI670011_02g007140.1 Cre02g0714 489995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0714 263 CDD DPBB_EXLA_N 16 141 - -
Cre02g0714 263 Pfam Lytic transglycolase 59 134 IPR009009 -
Cre02g0714 263 Gene3D - 12 139 IPR036908 -
Cre02g0714 263 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Cre02g0714 263 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Cre02g0714 263 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Cre02g0714 263 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576(InterPro)
Cre02g0714 263 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Cre02g0714 263 Gene3D - 141 245 IPR036749 -
Cre02g0714 263 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Cre02g0714 263 PANTHER EXPANSIN-B3 7 246 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cre02g0714 263 Pfam Expansin C-terminal domain 147 229 IPR007117 -
Cre02g0714 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Cre02g0714 263 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
Cre02g0714 263 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cre02g0714 263 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cre02g0714 263 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cre02g0714 263 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cre02g0714 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 240 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0708 Cre-Chr2:3971385 Cre02g0714 Cre-Chr2:4000850 5.30E-99 dispersed
Cre02g0711 Cre-Chr2:3990405 Cre02g0714 Cre-Chr2:4000850 5.90E-111 dispersed
Cre02g0714 Cre-Chr2:4000850 Cre02g0716 Cre-Chr2:4016487 2.10E-100 dispersed
Cre02g0713 Cre-Chr2:3996642 Cre02g0714 Cre-Chr2:4000850 8.70E-105 tandem
Cre02g0714 Cre-Chr2:4000850 Cre02g0715 Cre-Chr2:4009355 8.40E-97 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0714 - - - 0.0