Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0716 ATGACTTCTTCATTTCTTGCTTTTATTAGCTTCTTTGTTCTCCTTATCTCTTTTGTTAATGCTTGCAATCGATGCATTCATCAATCTAAAGCGGCTTATTACTATAGTGATGCACCTATTACATATGGGGCATGTGGCTATGGTTCTTTGGCAAATGAATCTTTCCATGGATACATTGCTGGTGCGGTGCCCTTGCTATACAAACAAGGAGTTGGTTGTGGTGCTTGCTTTCAAGTGAGGTGCAAGAACAAGAAGCTGTGCAGCCCAATTGGAGCTAAAATAGTTTTGACAGATCAAAATTATGATAACCGAACTGATTTTGTTCTTAGTAGGAAAGCTTTCTCAGAAATGGCTCGATGGGGCAAGGCCCAAGATCTTTTGAAACTTGGAATGGTTGATATTGAATACAAGAGGGTACCATGCGGATACAAAAACAAAAATTTGTTGGTGAGAATAGAAGAATGGAGCAACAAGCCTTACTACTTGGCCATGAAATTCCTTTACCAAGGTGGCCAGACAGAAATAAAAGCAATTGACATTGCTCAAGTTGGTTCTTCAGATTGGGAAGCTTTGAAGAGAAACTATGGAGCTATTTGGGATACAAGTAAAGTACCTGAAGGAGCATTGCAACTAAGAATTGTGGTAGCTTCAGGATATGATAATGAGAATTGGATTTGGACAAATTATGAAATTCCTGCTGATTGGAAAAATGGAGAAACTTATGATACAGGGATTCAAATTGAAGATATTGCCAAAGAATTTTGTTCCCCAAGAGAGTGTGGTGATAGAATATGGAAATAA 801 38.2 MTSSFLAFISFFVLLISFVNACNRCIHQSKAAYYYSDAPITYGACGYGSLANESFHGYIAGAVPLLYKQGVGCGACFQVRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKRVPCGYKNKNLLVRIEEWSNKPYYLAMKFLYQGGQTEIKAIDIAQVGSSDWEALKRNYGAIWDTSKVPEGALQLRIVVASGYDNENWIWTNYEIPADWKNGETYDTGIQIEDIAKEFCSPRECGDRIWK 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4016487 4018678 - CrPI670011_02g007160.1 Cre02g0716 489997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0716 266 SUPERFAMILY PHL pollen allergen 146 242 IPR036749 -
Cre02g0716 266 Gene3D - 143 247 IPR036749 -
Cre02g0716 266 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576(InterPro)
Cre02g0716 266 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576(InterPro)
Cre02g0716 266 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576(InterPro)
Cre02g0716 266 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576(InterPro)
Cre02g0716 266 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576(InterPro)
Cre02g0716 266 Pfam Expansin C-terminal domain 152 218 IPR007117 -
Cre02g0716 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 146 IPR007112 -
Cre02g0716 266 Pfam Lytic transglycolase 65 136 IPR009009 -
Cre02g0716 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 243 IPR007117 -
Cre02g0716 266 PANTHER EXPANSIN-B3 9 249 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cre02g0716 266 Gene3D - 18 141 IPR036908 -
Cre02g0716 266 SUPERFAMILY Barwin-like endoglucanases 11 145 IPR036908 -
Cre02g0716 266 CDD DPBB_EXLA_N 17 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0713 Cre-Chr2:3996642 Cre02g0716 Cre-Chr2:4016487 2.40E-102 dispersed
Cre02g0714 Cre-Chr2:4000850 Cre02g0716 Cre-Chr2:4016487 2.10E-100 dispersed
Cre02g0716 Cre-Chr2:4016487 Cre03g1521 Cre-Chr3:30005114 3.70E-76 dispersed
Cre02g0715 Cre-Chr2:4009355 Cre02g0716 Cre-Chr2:4016487 5.60E-101 tandem
Cre02g0716 Cre-Chr2:4016487 Cre02g0717 Cre-Chr2:4020169 2.10E-71 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0716 - - - 0.0