Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0756 ATGATCGTCTGCGTCGCCGTCGTCGGCCACCAGAACAACCCCCTTTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATTGTACACTGTTCGCTGGATGTCGTCGATGAGCGGGTGAACAATCCGAGAAAATCTGGACCAACCCTGAACGAAACATTTCTGGGTCTTCTTTATCCGACCGAAAATTACAAAGTGTATGGCTATTTGACTAACACCAAAGTGAAGTTTATTATGGTGACAACAGATCTAGATGTCAGAGATGCCGATGTGAGAAGTTTTTTCAGGAGATTTCATGCTGCATATGTGGATGCAGTTTCAAACCCATTTCATGTGCCAGTTCAGCTATTTGAGTGA 369 45.53 MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPVQLFE 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4415818 4418036 - CrPI670011_02g007560.1 Cre02g0756 490037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0756 122 Pfam Sedlin, N-terminal conserved region 7 117 IPR006722 GO:0006888(InterPro)
Cre02g0756 122 SUPERFAMILY SNARE-like 2 117 IPR011012 -
Cre02g0756 122 CDD TRAPPC2L 3 117 IPR044760 GO:0006888(InterPro)
Cre02g0756 122 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2 3 117 IPR006722 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006888(InterPro)|GO:0006888(PANTHER)|GO:0030008(PANTHER)
Cre02g0756 122 Gene3D - 1 120 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0756 K20301 - - csv:101211102 243.817
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g178 . . . . . . . . . Cmo11g01749 . . . . Sed05g3908 Cpe04g00601 . Bhi05g01696 Tan02g0668 Cmetu01g1432 . Hepe02g0416 . . Cla02g00416 Cam02g0426 Cec02g0424 Cco02g0442 Clacu02g0427 Cmu02g0422 Cre02g0756 . . Cone3ag0958 Cone10ag1231 . Csa07g00111 . Cme01g01251 . . . . . . . . . . . Cma11g01369 . . . . . . . . . . . . . . . . . . . Lsi11g01211 . Chy01g00672 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010608 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 31