Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0772 ATGAGCTTTGAAGGTCGCGTTATCAAATTGGGGGAGCAGATTTTTGCTAACTTCGAGGTAATCTCTCTTCTCTACAAATCAAACGCCGTCCGTTTTGGTGCTCTGTGGCCTCCTCCCATGGCGTTACCCGTCGTAGACACAGAGTACCTCAAAGAGATCGACAAGGCTCGCCGTGACCTCCGCGCTCTCATTGCCAATCGGAACTGCGCTCCCATCATGCTTCGTTTAGCTTGGCATGACGCTGGCACATACGATGTGACTACAAAAACTGGTGGGCCTAATGGATCGATTAGGAACGAGGAGGAGTTTTCTCATGGTTCTAATAATGGACTGAAAAAAGCTATTGATTTTTGTGAGGAAGTGAAGTCTAAACATCCGAAGATTACTTATGCAGACCTGTACCAGCTAGCTGGCGTTGTTGCTGTTGAGGTCACTGGAGGCCCCACCATTGACTTTGTTCCCGGTAGAAAGGATTCAAACATTTGTCCCAGGGAAGGCCGACTTCCTGATGCCAAAAAAGGTGCACCACATCTGCGTGACATCTTTTATAGGATGGGCCTGTCTGACAAGGATATTGTTGCATTGTCCGGGGGTCACACTTTGGGAAGAGCACATCCAGAGAGATCTGGTTTTGATGGACCTTGGACAGAGGACCCTCTGAAATTTGATAACTCATACTTTGTGGAACTGTTGAAAGGAGAATCAGAGGGACTATTAAAACTTCCTACGGACAAGGCTTTACTTGAAGATCCTGAGTTCCGCAAATATGTGGAATTGTATGCAAAAAATGAAGATGCATTCTTCAAAGATTATGCTGAATCACACAAGAAACTTTCAGAGCTAGGGTTCACTCCAGGTTCTGGCAGGGCAATTGTGAAGGACAGCACTGTATTGGCACAGGGTGCCGTTGGAGTTGCGGTTGCAGCTGCTGTGATCATCACCTCATATCTGATGATTTAG 960 46.67 MSFEGRVIKLGEQIFANFEVISLLYKSNAVRFGALWPPPMALPVVDTEYLKEIDKARRDLRALIANRNCAPIMLRLAWHDAGTYDVTTKTGGPNGSIRNEEEFSHGSNNGLKKAIDFCEEVKSKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNICPREGRLPDAKKGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTEDPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRKYVELYAKNEDAFFKDYAESHKKLSELGFTPGSGRAIVKDSTVLAQGAVGVAVAAAVIITSYLMI 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4561722 4566211 + CrPI670011_02g007720.1 Cre02g0772 490053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0772 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
Cre02g0772 319 Pfam Peroxidase 57 263 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0772 319 Gene3D - 56 282 - -
Cre02g0772 319 FunFam Cytosolic ascorbate peroxidase 56 173 - -
Cre02g0772 319 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 42 283 IPR044831 GO:0000302(PANTHER)|GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0009507(PANTHER)|GO:0034599(InterPro)|GO:0034599(PANTHER)|GO:0042744(PANTHER)
Cre02g0772 319 Gene3D Peroxidase, domain 2 169 275 - -
Cre02g0772 319 CDD ascorbate_peroxidase 43 285 - -
Cre02g0772 319 SUPERFAMILY Heme-dependent peroxidases 53 287 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0772 319 FunFam L-ascorbate peroxidase, cytosolic 169 275 - -
Cre02g0772 319 ProSiteProfiles Plant heme peroxidase family profile. 70 299 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0772 319 PRINTS Plant ascorbate peroxidase signature 207 231 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0772 319 PRINTS Plant ascorbate peroxidase signature 88 98 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0772 319 PRINTS Plant ascorbate peroxidase signature 185 206 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0772 319 PRINTS Plant ascorbate peroxidase signature 102 126 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0772 319 PRINTS Plant ascorbate peroxidase signature 146 158 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0772 319 PRINTS Plant ascorbate peroxidase signature 49 69 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0772 319 PRINTS Plant ascorbate peroxidase signature 70 85 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0772 319 PRINTS Plant ascorbate peroxidase signature 127 145 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0772 319 PRINTS Plant ascorbate peroxidase signature 259 283 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0772 319 PRINTS Plant ascorbate peroxidase signature 167 184 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0772 319 ProSitePatterns Peroxidases active site signature. 70 81 IPR019794 GO:0004601(InterPro)
Cre02g0772 319 PRINTS Haem peroxidase superfamily signature 215 230 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0772 319 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0772 319 PRINTS Haem peroxidase superfamily signature 70 84 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0772 319 PRINTS Haem peroxidase superfamily signature 146 158 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g0772 319 PRINTS Haem peroxidase superfamily signature 128 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0772 K00434 - - csv:101206941 575.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0772 Cre-Chr2:4561722 Cre03g0516 Cre-Chr3:3701048 1.40E-93 dispersed
Cre02g0772 Cre-Chr2:4561722 Cre04g1662 Cre-Chr4:34969056 1.70E-112 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g153 . . . . . . . . Cmo19g00743 . . Cma20g00755 . Car20g00656 Sed05g2221 . Cpe15g00588 Bhi05g01723 Tan02g0693 Cmetu01g1869 . Hepe02g0429 . . Cla02g00433 Cam02g0442 Cec02g0440 Cco02g0458 Clacu02g0443 Cmu02g0438 Cre02g0772 Cone12ag1230 Cone8ag1282 . . Lsi10g00492 Csa07g00094 Chy11g00259 Cme01g01268 Blo04g00565 . . Bda14g00614 Bpe15g00816 . Bma03g00606 . Sed01g0198 . Cmo20g00751 . Cma19g00735 . Car19g00564 Cpe16g00314 . Bhi10g01856 Tan05g1144 Cmetu11g0298 . Hepe08g0289 . . Cla02g01164 Cam02g1241 Cec02g1250 Cco02g1291 Clacu02g1223 Cmu02g1191 Cre02g1502 . Csa02g01388 . Cme11g00384
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63