Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0778 ATGGTAGATGAAACTGTTGTAGTTGGTTCTCACGAATCTAAGATTTCGGAAGGGGAAGATTTTTTTGAGGAGGCATTAGATGGGAAAGATCATTTAATAGAGCAGAGTCCGAAATATGGTTCAGTGAATGGCGATGTTGCAGAAGAAGAAGAAATCAATGATTTTACATCTGGAGTGACTCCTGACCATCCTAATGGTGCTCACGATGAAGAGAAGTTTGAAGAGGCAGTAGAGGCGTCTAGTGGGGTGAATGAAAACACAGTGAGGGAGGAGCAAGTTGTGAATTCTGAGAAGGAGAAGGAAGGCTTGGGTGGGAAATTAGTTGACACTGCAGTTGTGGCTTCTACAATTGATGAGAGAGGAACTGAAGACGAAGCAGTGACTTCTGAGTTGAATGAGAGGAAGGATGATGAGTTGGATTTCAGTAGAGATAATTCAAGAAAGGAGGCATCGGAGAACGGTGCTATCCCAGAGGTTGAAGAAGTGCTGAAGAATGGGGATGAGGATGATTTGAAATATGGTTTGACGATTATGAAGTCTGAAAATAAAAACAGTGACAATTTGAATGTGACTTTGCCTTTGGATGATGAAATAGTGAATAAGAGTGCTGATTTGGTAGGGGGGACTAACCTCGATTTTACCAGTGAGATTCTTACTGAAAATCGAGATGACATGGAATTGAATGGGAAGAGCTTAGGTACAGAGTCTACAGACCATGTTGAGAAGACTGAGGAGCCACTAAATGTACCTGCTGTTCTTGATTTGGACAATCCAGATAATATGAATGCTGATCTAAGGGATGATTCTCTTCACGTGGATCTAGAACTGCCAGACAATGATAGTGAAGACATAAAAAAGGCTACAACTAGTATTGATCCTAAGAAGGATAATAATAATGATGAAGAAAGCTCTACAGCCTGCATGACTACCACAAATCAGGACCACAGGATTGAGGAAGTGAAAGATGCTTCTACTGGGAAAGACTCAGAAGAGCAGTCTAGAGATTCTCGTGAATTGAATGGTACTACTTCTGCTGACCAACATGAACCTGTGGGTGAAAATGAAATATCTCTGGAGGCAGTTAAGGATATCTCAGCTTCTGAAAAGATAGCAGATGAGAAAATTGAGAAGATCCAGGGCAGTGAAAGTGATGTGACTGTGAAGGAAGACAATACGTCTAGACATCAGCATCCTGTTGATAGTTCCAATAATGGCCCCGACATTGGAGGGCTTGAAAAGACAGAGAGCAAAGATAAGGTTGGACAGGACAAAACTCAAGTGAACAGGGATCCAGAGATTCAACCTGCATCAATCGTTGCTTCATCATCTGGAAAATCTACAAATCCCACTCCTCCTGCCCGTCCAGCTGGTCTTGGGCGTGCTGCTCCATTATTGGAACCTGCCCCTCGGGTGGTGCAGCCGCCTCGAGTTAATGGTACTGTATCCCATGTTCAAATGCAACAAATTGATGATCCTGTTAATGGGGATGCTGAGGAAAATGATGATACTCGGGAGCAACTCCAGATGATAAGAGTGAAATTTTTGCGTCTTGCACACAGGCTCGGGCAAACTCCACACAATGTTGTTGTGGCACAAGTTCTATACCGTCTTGGATTAGCTGAGCAACTTCGAGGAAGAAATGGAGGTCGGGTTGGTGCCTTCAGCTTTGACCGTGCCAGTGCCATGGCAGAGCAGCTGGAGGCAGCTGGGCAGGAACCACTTGATTTCTCTTGTACGATCATGGTTCTTGGAAAGACAGGTGTGGGCAAAAGCGCTACCATCAACTCCATCTTCGACGAAGTTAAATTCAGTACTGATGCTTTTCAAATGGGCACAAAAAAGGTTCAAGATGTTGTAGGAACTGTGCAGGGGATCAAAGTACGGGTAATTGACACTCCTGGCCTTCTTTCCTCTTGGTCAGACCAGCGCCAAAATGAGAAGATCCTTCTCTCTGTTAAGCGTTTTATAAAGAAAACGCCTCCAGATATTGTCCTGTATCTTGATAGGTTGGACATGCAAACCCGGGATTTCAGTGACATGCCACTCTTGCGTACAATCACTGAAATATTTGGACCATCAATATGGTTCAATGCAATTGTGGTTCTTACTCATGCAGCATCTGCTCCACCTGATGGTCCCAATGGTACTGCTTCTAGTTATGATATGTTTGTCACTCAGCGATCTCATGTTGTACAGCAAGCTATACGCCAGGCTGCAGGGGATATGCGCCTTATGAATCCTGTCTCATTAGTGGAGAACCACTCTGCTTGCAGAACGAACAGAGCTGGGCAAAGGGTATTGCCGAATGGTCAGGTTTGGAAACCTCATTTATTATTGCTCTCATTTGCTTCAAAGATTTTGGCCGAAGCTAACACTCTTCTGAAGTTGCAAGATAGTCCTCCTGGGAGGCCATTTACTCCTAGGTCAAAGTCACCTCCTTTGCCGTTCCTTCTCTCTTCCCTTCTTCAGTCCAGACCTCAAGTTAAACTGCCAGAGGAACAGTTTGCTGATGATGATGGTCTTGAGGATGACCTTGATGAATCATCAGATTCTGAAAATGAATCGGAATATGATGAATTGCCACCTTTTAAACGATTGACAAAAGCACAGGTAGCAAAGCTCTCCAAAGCACAGAAGAAGGCCTACTTTGACGAGTTGGAATACAGGGAAAAACTTTTTATGAAGAAGCAACTAAAAGAAGAGAAAAGGAGAAGGAAGATGATGAAGAAAATGGCTGCTGAGGCAAAAGATCAACCCAGTGACGGTAGTGAAAATGTAGAAGAAGATGGTGGTGCTGCTGCATCAGTACCAGTTCCCATGCCCGATTTGGCATTACCTGCCTCATTTGATTCTGATAATCCTACTCACCGGTATCGTTATCTTGATTCCTCTAACCAGTGGCTAATAAGGCCTGTACTAGAAACACATGGATGGGATCATGATGTTGGTTATGAAGGTATAAATGCAGAGAAGTTGTTTGTTGTCAAAGACAGAATACCCATCTCTTTTAGTGGCCAAGTTACGAAGGATAAGAAGGATGCAAATGTTCAAATAGAGATGACCAGTTCAATAAAGCATGGGGAGACTAAAGCATCTTCCATTGGTTTCGATATGCAGACTGTTGGGAAGGATTTGGCCTATACATTACGTGGTGAGACAACATTTATTAATTTTAGGAAGAACAAGGCAATTGCTGGTCTGTCAGTTGCCCTATTAGGCGATGCCTTGTCTGCTGGATTCAAAGTTGAAGACAAATTGATTGCTAATAAGCGATTTCGATTAGTTGTGACTGGGGGTGCAATGACCGGTAGGGGAGATGTAGCTTATGGTGGCAGTCTGGAGGCTCAATTGAGAGACAAAGATTATCCTTTGGGTCGTTCACTTTCAACTCTTGGGCTCTCAGTCATGGATTGGCATGGAGATCTTGCTATTGGTTGCAACGTACAATCTCAAGTTCCCGTTGGACGATCAACAAACCTGGTTGCTCGTGTGAATTTGAATAACAGGGGGGCAGGACAAAAAGCTTCTGGGTTGTTATCAATACTGGCAGGATGGACAATGATGGGAACTAGGTTACAGATGCAGCTGAATTTTTGCAATATAGCTTGGCACGTCTCCAGTGTATGCAAAGACGAAACCAACACTGAATCGATCGAACCGGATCTAGCCAGTGCAGATGATTGCCCCTCCTCAAGACATCTATATAAGACAGGTTCATTATTATAA 3726 43.61 MVDETVVVGSHESKISEGEDFFEEALDGKDHLIEQSPKYGSVNGDVAEEEEINDFTSGVTPDHPNGAHDEEKFEEAVEASSGVNENTVREEQVVNSEKEKEGLGGKLVDTAVVASTIDERGTEDEAVTSELNERKDDELDFSRDNSRKEASENGAIPEVEEVLKNGDEDDLKYGLTIMKSENKNSDNLNVTLPLDDEIVNKSADLVGGTNLDFTSEILTENRDDMELNGKSLGTESTDHVEKTEEPLNVPAVLDLDNPDNMNADLRDDSLHVDLELPDNDSEDIKKATTSIDPKKDNNNDEESSTACMTTTNQDHRIEEVKDASTGKDSEEQSRDSRELNGTTSADQHEPVGENEISLEAVKDISASEKIADEKIEKIQGSESDVTVKEDNTSRHQHPVDSSNNGPDIGGLEKTESKDKVGQDKTQVNRDPEIQPASIVASSSGKSTNPTPPARPAGLGRAAPLLEPAPRVVQPPRVNGTVSHVQMQQIDDPVNGDAEENDDTREQLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFSTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLSSWSDQRQNEKILLSVKRFIKKTPPDIVLYLDRLDMQTRDFSDMPLLRTITEIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANTLLKLQDSPPGRPFTPRSKSPPLPFLLSSLLQSRPQVKLPEEQFADDDGLEDDLDESSDSENESEYDELPPFKRLTKAQVAKLSKAQKKAYFDELEYREKLFMKKQLKEEKRRRKMMKKMAAEAKDQPSDGSENVEEDGGAAASVPVPMPDLALPASFDSDNPTHRYRYLDSSNQWLIRPVLETHGWDHDVGYEGINAEKLFVVKDRIPISFSGQVTKDKKDANVQIEMTSSIKHGETKASSIGFDMQTVGKDLAYTLRGETTFINFRKNKAIAGLSVALLGDALSAGFKVEDKLIANKRFRLVVTGGAMTGRGDVAYGGSLEAQLRDKDYPLGRSLSTLGLSVMDWHGDLAIGCNVQSQVPVGRSTNLVARVNLNNRGAGQKASGLLSILAGWTMMGTRLQMQLNFCNIAWHVSSVCKDETNTESIEPDLASADDCPSSRHLYKTGSLL 1241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4645884 4650388 + CrPI670011_02g007780.1 Cre02g0778 490059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0778 1241 Gene3D - 547 795 IPR027417 -
Cre02g0778 1241 MobiDBLite consensus disorder prediction 260 301 - -
Cre02g0778 1241 MobiDBLite consensus disorder prediction 77 102 - -
Cre02g0778 1241 MobiDBLite consensus disorder prediction 118 160 - -
Cre02g0778 1241 MobiDBLite consensus disorder prediction 427 450 - -
Cre02g0778 1241 FunFam Translocase of chloroplast 120, chloroplastic 550 797 - -
Cre02g0778 1241 Pfam AIG1 family 578 736 IPR006703 GO:0005525(InterPro)
Cre02g0778 1241 ProSiteProfiles AIG1-type G domain profile. 575 804 IPR006703 GO:0005525(InterPro)
Cre02g0778 1241 MobiDBLite consensus disorder prediction 903 935 - -
Cre02g0778 1241 MobiDBLite consensus disorder prediction 372 396 - -
Cre02g0778 1241 MobiDBLite consensus disorder prediction 372 460 - -
Cre02g0778 1241 MobiDBLite consensus disorder prediction 314 337 - -
Cre02g0778 1241 Pfam Translocase of chloroplast 159/132, membrane anchor domain 936 1173 IPR024283 -
Cre02g0778 1241 NCBIfam chloroplast protein import component Toc86/159, G and M domains 454 1173 IPR005690 GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0009707(InterPro)|GO:0045036(InterPro)
Cre02g0778 1241 MobiDBLite consensus disorder prediction 222 360 - -
Cre02g0778 1241 MobiDBLite consensus disorder prediction 411 426 - -
Cre02g0778 1241 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 576 1141 IPR045058 GO:0009707(PANTHER)|GO:0045036(PANTHER)
Cre02g0778 1241 Coils Coil 898 918 - -
Cre02g0778 1241 MobiDBLite consensus disorder prediction 832 862 - -
Cre02g0778 1241 CDD Toc34_like 550 795 - -
Cre02g0778 1241 MobiDBLite consensus disorder prediction 836 856 - -
Cre02g0778 1241 MobiDBLite consensus disorder prediction 222 245 - -
Cre02g0778 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 571 712 IPR027417 -
Cre02g0778 1241 MobiDBLite consensus disorder prediction 907 923 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0778 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0778 Cre-Chr2:4645884 Cre10g1236 Cre-Chr10:25192858 7.30E-183 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g129 . . . . . Bpe12g00112 . . Cmo19g00737 . . . . . Sed08g0469 . Cpe15g00583 Bhi05g01734 Tan02g0702 Cmetu06g1183 . Hepe02g0438 . . Cla02g00439 Cam02g0448 Cec02g0446 Cco02g0466 Clacu02g0450 Cmu02g0444 Cre02g0778 Cone2ag0203 Cone16ag0840 . . . Csa07g00087 . Cme01g01277 Blo04g00558 Blo13g00521 . Bda14g00607 Bpe15g00822 . Bma03g00599 Bma08g00616 . . . Cma11g01385 Cma19g00728 . Car19g00558 . . . . . . . . . . . . . . . . Lsi11g01187 . Chy01g00691 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005811 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39