Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0781 ATGACGATTTCGGAGAATACGAAGGGGCTGGTTCTTGCTATGGCGTCCAGTGTGTTTATTGGGTCGAGTTTTATCTTGAAGAAGAAAGGACTTAAGCGTGCCGGAGCAACAGGGGCCAGAGCAGGTGTTGGTGGTTACACATACCTGTTAGAGCCACTTTGGTGGGCAGGCATGGTCACAATGATTATTGGAGAGATTGCAAACTTTGTAGCATATATTTATGCCCCAGCAGTTTTAGTCACACCCCTTGGTGCACTGAGCATTATTGTCAGTGCTGTTTTAGCCCACTTCTTATTGAAGGAGAGGCTACAGAAAATGGGTGTTGTAGGGTGTTTATCTTGTATTGTAGGATCAGTTATAATAGTTATCCATGCACCTCAGGAACATACTCCTGATTCTGTTGAAGAGATTTGGGATTTAGCAACTCAACCAGCTTTTCTAGTCTACATTGCTGCTATAGCTTCATTAGTGTTGGCTCTCATGTTGTATTTCGAACCTCGTTATGGACATGTAAACATACTGGTCTACTTGGGAATCTGTTCTCTAATGGGTTCATTGACGGTTATGAGTATTAAAGCTATCGGAATAGCGATACGGCTTACGCTTGAAGGGGTAAGCCAAGTAGCTTACCCTCAAACTTGGCTTTTTGTCACAGTTGCAGTAGTCTGTGTCATCACACAACTAAATTATTTGAATAAGGCATTGGATACATTCAATGCAGCCCTTGTATCTCCAGTATATTATGCCATGTTCACGACATTGACTATTATTGCTAGTGGTATCATGTTCAAGGACTGGTCTGGCCAGAATGCGAGCACGATAGTCTCTGAATTATGTGGATTCATTACCGTCCTTTCCGGAACTATCATTCTTCATTCAACCAGAGAACAGCAACCAGTCTCCTCACAAGGATCTGTGGCATGGTATATTAGTGGGGATTCAATGAAAGTATACTCATACTGGAAGGATGAGTACAATGCCCCATTTTTGAATTGCAACGACGAATTGCCATATCAGTCATCGTCTTCTCAAGACTCGAGCGGTCCTGTCCCCTTTGCTGCTGCAAAAAGGTTTAGCGTTCAAACCCGAGCGGCTCGATCTGACGCAACTCCGGCCACTCATTCTGCTGCCAACAAACGCAAACCCCAAATTCTCACAGAATCTCGAAGCACAACAACAATGGCGGCAATGGTTTCTCCATGGGGAAAACCAGGCGCTTGGGCCCTCGATTCCGAGGAACACGAAGCTCAACTCCTTAAAGAAGAGGAACAGCAGAAACAGCAGGAACTCAGCCTGGATTTTCCTTCCCTCAACGATGCCTTGGCCACCAAGCCGAAGAAGAAAGGGCAAACTCTCTCATTGGCTGAGTTCAACACCTATGGAATTAGTGGGTCGAGATCTTCTTCCCAAGGCCCCAGGAATGAGGATTTGATTGTACTACCCACCGGCCCTCGCCAACGGACGGCGGAGGAGCTCGACCGGAACAGGCTCGGTGGTGGATTCAGGAATTATGGTTCGAATGGTTCGTATGAGAGGAATAATAGGTATTCTAATGGGGATGATTCGTCTGATTCGAAATGGGGTTCGTCTAGGGTTTCTGATGAGAATCGGAGGAATAGTAACGGGTCTAATAGGGGGGATTCGAGTAAGGAATTTGCATCTTCTAGGGCTGACGAGGTTGATAATTGGGCTTTAACTAAGAAACCGATGGCTGCAAATGGATTTGAGAGGAGGGAAAGAGGAGTAGGGTTTTCGGATTCACAATCTTCAAAAGCCGACGAATCAGAGAGTTGGGTTTCTAATAAGAGCAATGTTCCGTCGGATGGAAGGAGATTTGGAGCTAACGGCGGATTTGACAGAGAGCGACGAGGAGGGTTCACGGCGAGCGGCGGCGGTGCAGATTCCGACAATTGGGGGAGGAAGAAAGAAGAAGGTAATACTGGTGGCGTCATTGGTGGTCGGCCAAAGCTTAATCTGCAGCCACGTACGCTGCCGGTTAGCGACGGGAAATCATCGGAGATATCAGGGACGACGGCGAGGCCCAAGAGTTCGAACCCATTTGGAGCGGCGAGGCCGAGGGAAGAGGTTTTAGCCGAGAAGGGACATGACTGGAAAAAGCTTGACGAGCAGCTAGAGTCGAAGATTAAGGAGGTGTCACTGGAGGAGAAGACAGAGAAATCCAACGCCTTTTCCTTTGGGAAAAAGAGCTTTGGCAATGGAAATAGCCGGGCTGCTGAGGATAGAACAGAGAAGAGCTGGAGGAAGCCGGAGTCTCCACCGCAGGAGTCACCGGAACCTCGTCCCGACAGTGGGGAAGAAAATGAAAATGGAGATTGCAAAGCCAACGGCGAACACAAAGGGGGCGAGAATGGAGCTTGA 2379 47.71 MTISENTKGLVLAMASSVFIGSSFILKKKGLKRAGATGARAGVGGYTYLLEPLWWAGMVTMIIGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFLLKERLQKMGVVGCLSCIVGSVIIVIHAPQEHTPDSVEEIWDLATQPAFLVYIAAIASLVLALMLYFEPRYGHVNILVYLGICSLMGSLTVMSIKAIGIAIRLTLEGVSQVAYPQTWLFVTVAVVCVITQLNYLNKALDTFNAALVSPVYYAMFTTLTIIASGIMFKDWSGQNASTIVSELCGFITVLSGTIILHSTREQQPVSSQGSVAWYISGDSMKVYSYWKDEYNAPFLNCNDELPYQSSSSQDSSGPVPFAAAKRFSVQTRAARSDATPATHSAANKRKPQILTESRSTTTMAAMVSPWGKPGAWALDSEEHEAQLLKEEEQQKQQELSLDFPSLNDALATKPKKKGQTLSLAEFNTYGISGSRSSSQGPRNEDLIVLPTGPRQRTAEELDRNRLGGGFRNYGSNGSYERNNRYSNGDDSSDSKWGSSRVSDENRRNSNGSNRGDSSKEFASSRADEVDNWALTKKPMAANGFERRERGVGFSDSQSSKADESESWVSNKSNVPSDGRRFGANGGFDRERRGGFTASGGGADSDNWGRKKEEGNTGGVIGGRPKLNLQPRTLPVSDGKSSEISGTTARPKSSNPFGAARPREEVLAEKGHDWKKLDEQLESKIKEVSLEEKTEKSNAFSFGKKSFGNGNSRAAEDRTEKSWRKPESPPQESPEPRPDSGEENENGDCKANGEHKGGENGA 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4665527 4672640 - CrPI670011_02g007810.1 Cre02g0781 490062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0781 792 MobiDBLite consensus disorder prediction 585 608 - -
Cre02g0781 792 MobiDBLite consensus disorder prediction 462 792 - -
Cre02g0781 792 PANTHER UNCHARACTERIZED 4 358 IPR008521 GO:0015095(InterPro)|GO:0015693(InterPro)|GO:0015693(PANTHER)|GO:0016020(PANTHER)|GO:0016020(InterPro)
Cre02g0781 792 MobiDBLite consensus disorder prediction 527 541 - -
Cre02g0781 792 MobiDBLite consensus disorder prediction 664 684 - -
Cre02g0781 792 Coils Coil 409 431 - -
Cre02g0781 792 MobiDBLite consensus disorder prediction 693 729 - -
Cre02g0781 792 MobiDBLite consensus disorder prediction 506 526 - -
Cre02g0781 792 Pfam Magnesium transporter NIPA 6 296 IPR008521 GO:0015095(InterPro)|GO:0015693(InterPro)|GO:0016020(InterPro)
Cre02g0781 792 Pfam Plant specific eukaryotic initiation factor 4B 397 719 IPR010433 GO:0003743(InterPro)
Cre02g0781 792 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 124 - -
Cre02g0781 792 MobiDBLite consensus disorder prediction 744 792 - -
Cre02g0781 792 MobiDBLite consensus disorder prediction 363 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0781 K22733 - - csv:101206224 612.453
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1470 Cre-Chr3:28572642 Cre02g0781 Cre-Chr2:4665527 2.00E-112 transposed
Cre05g0409 Cre-Chr5:3698534 Cre02g0781 Cre-Chr2:4665527 4.90E-107 transposed
Cre05g1126 Cre-Chr5:10691380 Cre02g0781 Cre-Chr2:4665527 2.10E-108 transposed
Cre06g1588 Cre-Chr6:11280775 Cre02g0781 Cre-Chr2:4665527 1.60E-97 transposed
Cre08g1700 Cre-Chr8:29377418 Cre02g0781 Cre-Chr2:4665527 4.10E-34 transposed
Cre09g0976 Cre-Chr9:10040706 Cre02g0781 Cre-Chr2:4665527 7.00E-123 transposed
Cre11g1262 Cre-Chr11:11103630 Cre02g0781 Cre-Chr2:4665527 5.30E-107 transposed
Cre11g1768 Cre-Chr11:29294757 Cre02g0781 Cre-Chr2:4665527 2.40E-106 transposed
Cre02g0781 Cre-Chr2:4665527 Cre02g1472 Cre-Chr2:26656928 4.60E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g119 . . . . . . . . Cmo19g00735 Cmo11g01727 . . . . Sed05g2232 Cpe04g00579 Cpe15g00581 Bhi05g01740 Tan02g0707 Cmetu01g1169 . Hepe02g0441 . . Cla02g00443 Cam02g0452 Cec02g0450 Cco02g0469 Clacu02g0453 Cmu02g0448 Cre02g0781 Cone12ag1216 Cone8ag1268 . . . Csa07g00083 . Cme01g01281 Blo04g00555 . . Bda14g00604 Bpe15g00826 . Bma03g00595 . . . . Cma11g01391 . . Car19g00555 . . . . . . . . . . . . . . . . Lsi11g01183 . Chy01g00695 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000928 3 9 3 2 2 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 2 2 2 2 2 2 6 7 3 86