Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0798 ATGTGGCTACAAAAAGGAAACAGTGTTAATGGCGTCAAAAAGGTAGCAGCAGCAGGCGGAGGGGGAAATGGGTTGGTTGCTATTGGTATAGACAGGGAAAAAGGAAGCCAAAATGCTCTCAGATGGGCCGCCGACCATTTGCTCGGAAAGGGTCATACTGTGATTTTAATCCATGTTGTTCAGAGACCTTCCAGTGCGGCTGCTTCTTTGATTGGGGAAGCCATTGTTTGTAGTGGCGATGGTAATTTCACAGCTGATTCCCCTCGTAAGCAGCAGCTCGAGATGCAGACTAGAGACATTTTTCTCACCTTCCATTGCTATTGTACTCGCAAGGATATTCAATGTCTTGATGTTATATTGGAAGACACCGATATAGTTAAAGCATTAATCGAATACGTATCGTACGCTGCAATCGATAACTTGGTGCTCGGGGCTCCTTCGAAACATGGATTTATTAGGTTTAAGACGTCGAGCATGGGCAGTAGTGTGTCAAAAGGAGCACCGGATTTCTGCAATGTATATGTCATCTCGAAGGGGAAGGTGTCGTCAGTGAGAAATGCATCTCGCTCACCTCCCTTTACTTCCCCTCTACAAGACCATTTACGGAAGATTTCTAAGCCGATCGCAAAGGGAGCAATCACTCCTCGACATAAGTTTAATTTAAGAGACAGGACGTCATTCAAGCCTCGCAGCTTTCAAGATGAATCAATCAAGTCACCTTTCTCTCATGGAGGAGAGAGAACTTCTATCTCAAAATGTAGTGGAGGATTCTCTGAGTCAGAATCTGACATATCCTTTGTAAGCTCTGGCAGACCAAGCACGGATCGTACTTCTTCTGTTGCATTTGACTACTCTGATTCGGCTCCCCCACGATTTTCAACCAGCTCAGAGCATAGCTTTGCATCTCTACCATTTAAACCAAAATGGACAGACCTCAGTAATCTCAATGATTTCTCATCAGTTTCAGATGAGAGCTGCAGGACATCATGTTCCTGGTCATCTCAGAACTTGGATGAAGCAGAACTTGAAATGAGGAGGCTGAAGCTAGAGCTTAAACAAACTATGGAGATGTACAGTACAGCATGTAAAGAAGCACTAACAGCAAAGCAAAAGGCAACGGAACTAAATAATTGGAGACGTGAAGAAGAACAAAAACTAGAAGAGGCACGACTTGCACAAGAGGCAGCAATGGCTATTGCAGAGCAGGAGCGAGCGAGATGCAGAGCGGCAATGGAAGCAGCTGATGCAGCTAAGAGAATTGCAGAGTTCGAATCACATAAAAGAGAAAATCTAGAGATTAAAGCACTTAAAGAAGCAGAGGAAATGCAGAGAGCATTGAAAAATCTTGCACAGAGCGACATCAGATACAGGAGATATTCAATTGAGGAGGTTGAATCGGCGACGGAACATTTTGCACAATCTCGGAAGATTGGGGAAGGAGGTTATGGACCTGTCTTTCGTTGTCGTCTTGATCACACATCAGTTGCAGTCAAGGTTTTGCGTCCTGATGCATCTCAAGGAAGGACACAGTTTCAGCAAGAGATTGATATATTGAGTTGCATAAGGCATCCCAACATGGTACTTCTTCTAGGAGCATGCCCTGAATATGGCATTCTAGTGTATGAATACATGTCCAACGGAAGTTTGGAGGATCGACTCTTTCGAAAGGGGAACACTCCTGTTATTCCTTGGCAATTGAGGTTTCGAATTGCTGCCGAGATTGCTACTGGCCTTCTGTTTCTCCACCAGACAAAGCCAGAGCCATTGGTGCACCGTGACCTCAAGCCAGCTAACATATTGCTGGACCACAACTATGTTTGCAAGATAAGTGATGTTGGTTTGGCTAGACTTGTACCTGCTGTGGCCGAAAATGTAACACAATGCTACATGACTTCGGCTGCTGGAACTTTCTGCTATATAGACCCTGAGTATCAACAAACTGGAATGCTTGGGGTTAAATCTGATGTGTATTCACTAGGTATCATGTTGCTTCAACTAATTACAGCCAAGCCCCCCATGGGGTTGGCTCACCATGTTGCTCGCTCTATCGAGAAGGGGACTTTTCGGGAGCTTCTGGACCCAGCTGTGGTTGATTGGCCAGTGGAACAAGCACTTTGCTTTGCAAAATTAGCACTTCATTGTGCAGAACTTAGACGAAAAGACAGACCAGATCTCGGCAAGGTTGTGTTGCCAGAACTTAACAAATTGAGAGAATTTGGTGAAGACAAAATGGAGTTCATGGTGTCAAGGGATAGTAGTGGATCTTTGAGCGGTTTTAGCCATGCCTCAATGGAGCAGGACGTAATGAGCGACCCACAACTAACGATGGCTTCAGAAAGTTCCAAGAGCCAATCTAGTGAATCATCACAGAAAGCCTTATCCAAAGGCTTCTATCATCAGTTTCTCAGAAGGTTGGATTTCCCACGACTCCATTCATCATCTATAAATACATATTTGATTGAGTTCAGAAACAACACAAGTCTTCATTCTTCTCAAGACAACACAAGTCTTCATTCTTCTCAAGAGAAGTTGTCTTCTCATCTCAAGCTTCTTCGACGACCTTCCACCTCAACAAAGGAAGGAGTTACAGTAGTTCCAAAGGGCTACTGCGCGGTCTATGTTGGAGAGATCCAAAAGAAGCGTTTTATCATCCCTGTAACGTACTTGAACCAACCATGTTTTCAAGACTTGCTTAGTCAATCTGAAGAAGAATTTGGTTATTATCATCCTATGGGTGGTCTTACCATTCAGTGCAGAGAAGATATCTTCACCAATCTCATTTCTCAGTTAAATAGGCCATGA 2802 44.08 MWLQKGNSVNGVKKVAAAGGGGNGLVAIGIDREKGSQNALRWAADHLLGKGHTVILIHVVQRPSSAAASLIGEAIVCSGDGNFTADSPRKQQLEMQTRDIFLTFHCYCTRKDIQCLDVILEDTDIVKALIEYVSYAAIDNLVLGAPSKHGFIRFKTSSMGSSVSKGAPDFCNVYVISKGKVSSVRNASRSPPFTSPLQDHLRKISKPIAKGAITPRHKFNLRDRTSFKPRSFQDESIKSPFSHGGERTSISKCSGGFSESESDISFVSSGRPSTDRTSSVAFDYSDSAPPRFSTSSEHSFASLPFKPKWTDLSNLNDFSSVSDESCRTSCSWSSQNLDEAELEMRRLKLELKQTMEMYSTACKEALTAKQKATELNNWRREEEQKLEEARLAQEAAMAIAEQERARCRAAMEAADAAKRIAEFESHKRENLEIKALKEAEEMQRALKNLAQSDIRYRRYSIEEVESATEHFAQSRKIGEGGYGPVFRCRLDHTSVAVKVLRPDASQGRTQFQQEIDILSCIRHPNMVLLLGACPEYGILVYEYMSNGSLEDRLFRKGNTPVIPWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDHNYVCKISDVGLARLVPAVAENVTQCYMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIMLLQLITAKPPMGLAHHVARSIEKGTFRELLDPAVVDWPVEQALCFAKLALHCAELRRKDRPDLGKVVLPELNKLREFGEDKMEFMVSRDSSGSLSGFSHASMEQDVMSDPQLTMASESSKSQSSESSQKALSKGFYHQFLRRLDFPRLHSSSINTYLIEFRNNTSLHSSQDNTSLHSSQEKLSSHLKLLRRPSTSTKEGVTVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISQLNRP 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4788930 4796531 + CrPI670011_02g007980.1 Cre02g0798 490079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0798 933 Coils Coil 428 448 - -
Cre02g0798 933 SMART serkin_6 471 733 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g0798 933 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 443 543 - -
Cre02g0798 933 MobiDBLite consensus disorder prediction 234 258 - -
Cre02g0798 933 SUPERFAMILY Protein kinase-like (PK-like) 453 729 IPR011009 -
Cre02g0798 933 Coils Coil 368 403 - -
Cre02g0798 933 Pfam Universal stress protein family 27 168 IPR006016 -
Cre02g0798 933 PANTHER OS02G0152300 PROTEIN 26 789 IPR051348 -
Cre02g0798 933 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 27 176 - -
Cre02g0798 933 Gene3D HUPs 25 176 IPR014729 -
Cre02g0798 933 ProSiteProfiles Protein kinase domain profile. 471 747 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g0798 933 MobiDBLite consensus disorder prediction 770 789 - -
Cre02g0798 933 Coils Coil 337 357 - -
Cre02g0798 933 Gene3D Phosphorylase Kinase; domain 1 438 543 - -
Cre02g0798 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 589 601 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g0798 933 CDD STK_N 30 179 - -
Cre02g0798 933 Gene3D Transferase(Phosphotransferase) domain 1 544 753 - -
Cre02g0798 933 FunFam U-box domain-containing protein 51 544 743 - -
Cre02g0798 933 Pfam Auxin responsive protein 846 928 IPR003676 GO:0009733(InterPro)
Cre02g0798 933 Pfam Protein kinase domain 472 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0796 Cre-Chr2:4782931 Cre02g0798 Cre-Chr2:4788930 2.20E-30 dispersed
Cre02g0798 Cre-Chr2:4788930 Cre05g2803 Cre-Chr5:38749871 9.40E-244 dispersed
Cre11g0868 Cre-Chr11:5786935 Cre02g0798 Cre-Chr2:4788930 6.90E-25 dispersed
Cre11g0869 Cre-Chr11:5790961 Cre02g0798 Cre-Chr2:4788930 3.70E-26 dispersed
Cre02g0797 Cre-Chr2:4784416 Cre02g0798 Cre-Chr2:4788930 1.40E-29 tandem
Cre02g0798 Cre-Chr2:4788930 Cre02g0799 Cre-Chr2:4798076 1.20E-24 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63856 PF00069 Pkinase 5.20E-41 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0798 - - - 0.0