Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0815 ATGGGTGATACTGAAGATGCTCGTACTGATAACCTACGAAATCTTCAATGTTCGTTTGGAACATCTTCCTCTTCTGCTTTAAAGCATCATTTCTCTATGGATCAACTTAAAATTTCTCAAATGAACTGCTCACAAGGCCGCGCACAGCATTTTCATTCGAATTTTCTTGGAGATAATAGTAGAAGAATTGGGATACCTCCTTGTCCCAACTCACCGCAGATCCCACCAATCTCACCGTATTCCCAGATCCCGGTGTCGCGTCCGATGAACCAGCAGAGTTATAACTCAGTTCCTACTCATTCTCGATCGTTATCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGTCCGTCTCCGTTTCGTGACTCCCCTTCTACATCGAATTCAGATCAGGTTTCTGCTGATACGTCAATGGAGGATAGAGATGCCAGTTCACATTCTTTGTTGCCTCCCTCACCTTATACGAGAGCCAATTCTTCGAAGATGGGTGATGCTTTACCTCCTCGTAAAGCCCATAGGCGTTCTAACAGTGATATTCCATTTGGATTATCTTCGATGATTCAGTCATCTCCTCTTCTCCCTTTTAGTGGTTCAGGTGGATTGGAGCGATCAACTAGTAGTAAAGAGAATGCGGGAATATTTAAGCCGGCCAGCCAGTTTGTTAAAAGAGAGCCTAGTTTGGAGAAAAGCATTGATAACAATTTGGAAGGAATGGGTGAAAAGAAGTCGGAAGGGGACACTGTGGATGATTTATTCTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCCTCAGGGACCAACGACAAGAATGGTCATGAGAATCGGGAGGATTTGGATAGTAGAGGTAGCGGAACAAAAACAGGGGGTGAGAGCAGCGATAATGAAGCAGAAAGCAGTGTGAACGAAAGTGGGGATAACTCTCAAGTGCCTGGATTGAATTCGTCTGCTGAGAAGAGGGAAGGGATTAAACGGACTGCAGGGGGAGATATTGCTCCAAATAACAGACATTACCGGAGTATCTCCATGGATAGTTTTATGGGCAAGTTACAGTTTGGTGATGAGTCACCGAAAATGCCTCCTACGCCGCCCGGCATTCGTCCAGGGCAACTTTCTTCAAACAACCTAGCTGACGGTAATTCGACTCCATTCAGCTTGGAGTTCGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCGGAGATTGCACTAACCGATCCCAAGCGTGCAAAGAGGATTTTGGCTAACCGTCAATCTGCTGCTCGATCAAAAGAACGGAAAATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACGCTGTCTGCCCAACTCACGCTTCTGCAGCGAGACTCTGTTGGACTTACAAACCAGAATAATGAACTTAAGTTCCGTCTCCAAGCCATGGAACAGCAAGCACAACTACGGGATGCTCTAAATGAAGCATTAACCGCGGAGGTTCAGAGATTGAAGCTCGCTACAACCAATATAAACGCGCAATCTCATCCCTCAGACGGGGTAATGGCTCAATCTTCTATGAATCACCACGGACTCCAACTTCAGCTTCAGCAGCAGCAACAACATCACCAACAACAGCAACATATGCAGCAGAATGGCAGTGCAACCACAAAACCAGAGTCCAACCAATAA 1710 45.09 MGDTEDARTDNLRNLQCSFGTSSSSALKHHFSMDQLKISQMNCSQGRAQHFHSNFLGDNSRRIGIPPCPNSPQIPPISPYSQIPVSRPMNQQSYNSVPTHSRSLSQPSFFSLDSLPPLSPSPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYTRANSSKMGDALPPRKAHRRSNSDIPFGLSSMIQSSPLLPFSGSGGLERSTSSKENAGIFKPASQFVKREPSLEKSIDNNLEGMGEKKSEGDTVDDLFSAYMNLDNIDLFNSSGTNDKNGHENREDLDSRGSGTKTGGESSDNEAESSVNESGDNSQVPGLNSSAEKREGIKRTAGGDIAPNNRHYRSISMDSFMGKLQFGDESPKMPPTPPGIRPGQLSSNNLADGNSTPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTNINAQSHPSDGVMAQSSMNHHGLQLQLQQQQQHHQQQQHMQQNGSATTKPESNQ 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4933479 4937259 - CrPI670011_02g008150.1 Cre02g0815 490096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0815 569 SMART brlzneu 417 481 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g0815 569 Coils Coil 437 492 - -
Cre02g0815 569 MobiDBLite consensus disorder prediction 57 249 - -
Cre02g0815 569 CDD bZIP_plant_RF2 422 471 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g0815 569 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 156 557 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre02g0815 569 MobiDBLite consensus disorder prediction 228 249 - -
Cre02g0815 569 SUPERFAMILY Leucine zipper domain 421 472 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g0815 569 MobiDBLite consensus disorder prediction 355 388 - -
Cre02g0815 569 MobiDBLite consensus disorder prediction 290 320 - -
Cre02g0815 569 FunFam probable transcription factor PosF21 420 473 - -
Cre02g0815 569 MobiDBLite consensus disorder prediction 83 115 - -
Cre02g0815 569 MobiDBLite consensus disorder prediction 268 342 - -
Cre02g0815 569 MobiDBLite consensus disorder prediction 516 569 - -
Cre02g0815 569 Gene3D - 420 472 - -
Cre02g0815 569 MobiDBLite consensus disorder prediction 373 388 - -
Cre02g0815 569 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 419 482 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g0815 569 MobiDBLite consensus disorder prediction 181 216 - -
Cre02g0815 569 MobiDBLite consensus disorder prediction 275 289 - -
Cre02g0815 569 Pfam bZIP transcription factor 421 475 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g0815 569 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0815 Cre-Chr2:4933479 Cre08g0642 Cre-Chr8:19356321 1.80E-40 dispersed
Cre02g0814 Cre-Chr2:4921570 Cre02g0815 Cre-Chr2:4933479 4.60E-272 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53108 PF00170 bZIP_1 1.00E-08 CL0018 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0815 - - - 0.0