Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0824 ATGCGTAGAACTGAAGTTGGTTGGGTGAGGGGGTTGGTCAGATCGGAAGACACCCATGGCTTGCTGGATGGTTACGACATGGAACTGAATCGAGGTGGTGGCCTGTTGGGCTGGGAGAAGGTTTGGGAAATGGGGGCGGTTGCTGGAGAGGAGTTGATGAAGTTGGAGAAAATGCAGGGGATAAATGCTCGTGAAGAGAAAATTCTTGTTTTAGTAAGGCTGAGACCCTTGAACGAGAAGGAGATTATGATGAATGAAGCTGCAGATTGGGAGTGTATCAATGATACTAGTATCTTGTACCGGAATACCTTACGGGAGGGGTCCACATTTCCAAGTGCCTATACTTTTGATAGAGTATTTCGAGGTGATTGCTCTACAAAGCAGGTGTACGAGGAAGGAGCCAGAGAAATTGCATTTTCTGTAGTCAGTGGTATCAACTCAAGTATTTTTGCATATGGTCAGACAAGCAGTGGAAAGACATATACCATGAATGGAATTCTTGAATATTCAGTGGCGGATATATTTGATTACATTAGAAGGCATGAAGAAAGAGCATTCATTGTGAAGTTTTCAGCTATTGAGATATATAATGAAGCTGTTAGAGACCTCCTGAGCACAGATACTAGTCCTCTCAGGCTACTAGATGACCAGGAGCGAGGGACTATTGTGGAGAAAGTCACTGAGGAAACTTTGAGGGACTGGAACCATTTAAGGGAGCTCATTTCAATTTGTGAAGCTCAACGACGGATTGGAGAGACCTCACTGAATGAGAAAAGTTCTAGATCTCATCAAATTATTAAACTGACAATTGAAAGTTCTGCTCGAGAGTTTTTAGGAAAAGACAATTCCACGACACTTGCTGCTAGTGTGAGTTTTATTGATTTAGCTGGGAGTGAACGTGCAGCTCAAGCATTATCAGCAGGGACGAGACTGAAAGAAGGATGTCACATAAATCGCAGTTTATTGACTCTGGGTACTGTCATTCGCAAATTAAGCAAAGGAAGAAATGGTCATATCAATTACAGAGATTCTAAGCTGACACGAATATTACAGCCCTGCTTAGGTGGCAATGCTAGAACAGCCATCATCTGTACATTGAGCCCTGCAAGAAGTCACGTTGAACAAACTAGAAACACTCTCTTGTTTGCTTGTTGTGCAAAAGAGGTGACAACAAAAGCTCAAGTCAACGTGGTCATGTCTGATAAGGCTTTGGTTAAGCATTTGCAGAAAGAGTTAGCGAGATTGGAGAGTGAGTTGAGAACTCCTGCCCCTGTTTCGTCCAGTTCTGAATATGCAGCCCTACTGAAAAAGAAAGATCTTCAAATTGAGAAGATGGCGAAGGAGATTAGAGAACTCACTAAGCAAAGGGATCTCGCTCAATCCCGAGTTGAAGATTTACTTCGTATGGTTGGACATGATGATGTCTCGAGAAAGGATATCAAAACTAGTTATTCCAAATTGCAAGCAAGGGATGGTTTAGAGTATGAAGGTTCACCATCAGAAACTTCAAGTGTGGCTGATTTTCGTGGTAGAGATATGGGTGGAAAATCCTTTAACAATCCTCATTATTATGATGGAGACAGTGATGATGGAAAGAGGTTCCTTGACTCTCACTCAGGTCAAAGTGGAATTACAACCGCTCTTGCAATAGCAGAAGATTCCGATGACTGCAAGGAAGTTCAATGTATTGAAATGGGGGAGTCAGTCAGAGACGATGGCTTGTCACCGCTTGCTGCTAACAATGGCGAATTTAGAGGAATGCCTTTTACTAGGTCAAACGATGGAAATATAATAGGTCATGAATTGATATCAACCCCTGTGAATGGGAACAGAGAAGCACACCAGATTCAAAATAATTCAACAAATGGTCAACCAGAGCAAAGACTCCATGATGTAAGAAGGATGGACATTAATTCTATGAGTAGTCCCTACCGCGACGATGCATGTTCAAAGGTTGCTGCTGACATGTCAAGCTCCAGAAGCTTGAAGCTAGCCAGAAGCTGGAGTTGTAGAGCCAATTTCACTACTGAGCTATCACCTGATAGAGGAGAGACCACCCCTCCTCATGGATTTGACAAAAGCTTTCCTGGAAGACCTGAAGGTTTTGAACGGAAACTCCCACAATTAGACTTTGATGGCAGCCTCCCGAGACTTGATTCTCAGTCTTCTATAGGAAGTGCTCGGAGCATCAAAACTTCTGCAGACGAAGACATTACTCGCTTAGACGCCTTTGTTGCTGGGTTGAAGAAAATGAGAAACTCAGAGTGTGGGAAAGAACTTGCTGAGGGGCAGGTTCTGGAGGATGGACAAGAAATAGATTTCTTAAAGAACACAAATTATGTTGGAGGTGAGGCATTGGCAGATGGATTAGTCACATCGGATTGGAACGAAGAATTTCAGAGGCAGCAGAGGATGATAATTGAGCTTTGGCAAACTTGCAACGTTTCGATTGTCCACAGAACTTACTTTTTCTTGCTCTTCCAAGGCGATCCTGCCGATTCCATTTACATGGAAGTAGAGCTTAGGAGACTGACTTTTCTAAAGCAAACATTTTATTACGGCAATGCAGCTATGGATGATGGCCGGAAAGTCTCTTTTTCTTCAAGTACAAGGGATCTTCGTCGCGAGAGAGAAACATTGAGTAAGCTAATGCAGAAGCGATTCTCAGAAGATGAAAGAAAAAGATTGTTCCAGAAGTGGGGAATTGCGTTGAATTCGAAACGCCGAAGGCTGCAGCTGGTCAGCCAGTTGTGGAGCGATCCGAAGAACATGAACCATGTAACAGAGAGTGCAGCCATTGTTGCCAAGCTTGTGAAGTTTGCTGAGCAAGGACAGGCCCTCAAGGGGAACTTTGGTCTCAGCTTCATTACACCTCCACAAAAAAGTAGATCATTTAGCTGGATAAACAATAGGACTTCTCTTATGTGA 2928 43.2 MRRTEVGWVRGLVRSEDTHGLLDGYDMELNRGGGLLGWEKVWEMGAVAGEELMKLEKMQGINAREEKILVLVRLRPLNEKEIMMNEAADWECINDTSILYRNTLREGSTFPSAYTFDRVFRGDCSTKQVYEEGAREIAFSVVSGINSSIFAYGQTSSGKTYTMNGILEYSVADIFDYIRRHEERAFIVKFSAIEIYNEAVRDLLSTDTSPLRLLDDQERGTIVEKVTEETLRDWNHLRELISICEAQRRIGETSLNEKSSRSHQIIKLTIESSAREFLGKDNSTTLAASVSFIDLAGSERAAQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHINYRDSKLTRILQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRTPAPVSSSSEYAALLKKKDLQIEKMAKEIRELTKQRDLAQSRVEDLLRMVGHDDVSRKDIKTSYSKLQARDGLEYEGSPSETSSVADFRGRDMGGKSFNNPHYYDGDSDDGKRFLDSHSGQSGITTALAIAEDSDDCKEVQCIEMGESVRDDGLSPLAANNGEFRGMPFTRSNDGNIIGHELISTPVNGNREAHQIQNNSTNGQPEQRLHDVRRMDINSMSSPYRDDACSKVAADMSSSRSLKLARSWSCRANFTTELSPDRGETTPPHGFDKSFPGRPEGFERKLPQLDFDGSLPRLDSQSSIGSARSIKTSADEDITRLDAFVAGLKKMRNSECGKELAEGQVLEDGQEIDFLKNTNYVGGEALADGLVTSDWNEEFQRQQRMIIELWQTCNVSIVHRTYFFLLFQGDPADSIYMEVELRRLTFLKQTFYYGNAAMDDGRKVSFSSSTRDLRRERETLSKLMQKRFSEDERKRLFQKWGIALNSKRRRLQLVSQLWSDPKNMNHVTESAAIVAKLVKFAEQGQALKGNFGLSFITPPQKSRSFSWINNRTSLM 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5018745 5025812 - CrPI670011_02g008240.1 Cre02g0824 490105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0824 975 ProSiteProfiles Kinesin motor domain profile. 67 389 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre02g0824 975 Gene3D Kinesin motor domain 59 420 IPR036961 -
Cre02g0824 975 MobiDBLite consensus disorder prediction 677 729 - -
Cre02g0824 975 ProSitePatterns Kinesin motor domain signature. 288 299 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cre02g0824 975 MobiDBLite consensus disorder prediction 715 729 - -
Cre02g0824 975 SMART kinesin_4 65 397 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre02g0824 975 Pfam Domain of unknown function (DUF3490) 798 957 IPR021881 -
Cre02g0824 975 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 421 IPR027417 -
Cre02g0824 975 Coils Coil 435 469 - -
Cre02g0824 975 PANTHER CENTROMERE PROTEIN E 63 967 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Cre02g0824 975 Pfam Kinesin motor domain 73 389 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre02g0824 975 Coils Coil 398 418 - -
Cre02g0824 975 CDD KISc_CENP_E 67 389 - -
Cre02g0824 975 PRINTS Kinesin heavy chain signature 144 165 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre02g0824 975 PRINTS Kinesin heavy chain signature 253 270 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre02g0824 975 PRINTS Kinesin heavy chain signature 339 360 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre02g0824 975 PRINTS Kinesin heavy chain signature 289 307 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre02g0824 975 MobiDBLite consensus disorder prediction 491 538 - -
Cre02g0824 975 FunFam Kinesin-like protein 61 420 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0824 K11498 - - csv:101213783 1727.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0824 Cre-Chr2:5018745 Cre08g1613 Cre-Chr8:28592391 1.50E-71 dispersed
Cre02g0824 Cre-Chr2:5018745 Cre02g0832 Cre-Chr2:5103926 1.40E-67 proximal
Cre07g1190 Cre-Chr7:24783377 Cre02g0824 Cre-Chr2:5018745 1.30E-129 transposed
Cre11g0512 Cre-Chr11:2050591 Cre02g0824 Cre-Chr2:5018745 1.40E-147 transposed
Cre02g0824 Cre-Chr2:5018745 Cre08g1400 Cre-Chr8:26992771 2.90E-219 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g46 Blo02g00649 . . Bda08g00962 . Bpe12g00095 . . Cmo19g00704 . . . . . . Cpe04g00100 Cpe15g00563 Bhi05g01255 . . . . . . Cla02g00484 Cam02g0492 Cec02g0493 Cco02g0498 Clacu02g0496 Cmu02g0491 Cre02g0824 Cone12ag1189 Cone8ag1236 . Cone10ag1095 . Csa07g00039 . Cme01g01338 Blo04g00541 Blo13g00533 Bda15g01063 Bda14g00581 Bpe15g00840 Bpe05g00313 Bma03g00574 . . . . . Cma19g00692 . Car19g00536 . . . . . . . . . . . . . . . . Lsi11g01139 . Chy01g00742 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004297 2 1 3 1 3 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 43