Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0829 ATGGAAGCCGAAGAAGATGATTCTTCGTATCATGACCCAAAATCTTCGTTGTATGTTGATGATGGAAACTTAGATGTTAAGTGTGACACCAATCGGGAGCTTCAGAGCAATGAAGAACAGCATTGTGTGTCCAAGTCCTCAATTATGGAAACGGAGTTTTCACCTAATACCGGCGTGGAATCTTTACCACCCAGAGATGCAATTCTTGGGGATGAAATTCTTGCTGTGGATACTTATTCAGAGATGGAGAAGAAGGATTTGGTGGAGGAGACAGAGATTGCAGGGGAGAAGGGTTTTCGCAACATTATTGAGGATATGGCGGAAGATTCAGTGAAGTTGGAGATTGAACCTGATATTGCGGAGACGGGGTTATTGGGACAAAGGGTTTTCGCTGATGTGAAAAAGAATACAGGGGTGTCGGAGGAGGAGAGGGCTTTGAGTGAATTTGCAGAAGGTGAGTTGTTACCTGAAATGGTTTTGGTTGGTGACGCTGAAAATCAGGTTGAGGGCAACGTTTTAATGGCGAATTTTTCAGAGGATACGGTCGTTGAAGGTTCAGCTACAGTTGGCTGTGCAGAGACAAACGAGAAGACGTGCCTGATTGATGTTTTGGCTGAGGAAACGCTTGCAGAAACGACTCTTTTTGTGCAGGATGTAGATGTTACTGATGCAACCAATTTGGTGAAGAAGACGGAGGTGGAAGAGAATGCCGATGACCCCAATGATTCGAAGGATACAGAGGTGCCAAAGCAAGAAAATTTTGGTGTGGAGGAAAGGCAATTAGGTGTCCCGGTGCAGTTGGCAGAGAACTCTGAGTTGAAAGTGAGTTCGGTAGATGGGGCTGTGGTGGAGGAGGGACAGTCGACAAATTTAGCAGACAGAACTGGTGAAACGTTGAAGATGAATGTCTCAAGCACCATTGATGAGGTGGGGGTGACACATTTTGCTGGGGAGATTAATGAGGCGGTAAATATAGGAAACGCTGAAGACAAGACTATTGAGATGGGCGGAATGTGTGTGTATGACAAGGCTACTGATGTTGCGATGATGGAGAATTTGGCAGATGAGTCCCCAGGGATCAAGGGAGTGGAGTTAGCAGACTACACTATTGAAGAGTTGAAGATTGAGAACGTGGAAGATAGGGAAGCGGGAGTGCAAGGATTGGGTGTGGCTGATGAGAGTCCCGTGGTTGGGAAGCTTGAGAATATGGCAGATGAGACTGCAGAGGCTGAGGAAGTGCAAGTGACTGACTACACTGCAGAAGACGTACAATCGGAGAATGTAGAAGAAGACAAGACTGTTCAAGGGGAGGACATAGCTATGGCAGAAGAGAGTGCGGAGGCAGATGACGTGGTTTATTTGGTGGATGAAGGGATTGGATCAGAGGAGACGGATGCAAACATGGCATACTTGGTGGAGGAAGCGGAAGCAGCAGAGGAGATTGAGGAGATGGATGTTACAGAAGAGGTGGATGAGCCAAATAAAGGTAGCAGTGGGTCTAAAAGGAAGCGTGGAAAGAATTCTAAAGCTCCAGCTAGAGTGCCTTCCAGGAAGAAGGTGGAAGAGGACGTTTGCTTTATTTGTTTTGATGGGGGTGATCTTGTACTCTGTGATCGCAGAGGTTGTCCCAAGGCATACCACCCGGCCTGTATTAATCGTGATGAGGCATTCTTCCGAGCCAAGGGTCGATGGAATTGTGGTTGGCATCTCTGTAGTAACTGTGAGAAGACTGCCCACTACATGTGTTACACATGTACTTTTTCCTTGTGCAAGGGCTGCATCAAAAATGCTGTTATTTTGTGTGTTAGAGGGAACAAAGGCTTCTGCGAGACATGCATGAGATTTGTTATGTTGATTGAAAAGAATGAGCAGGGGAATACAGAAAAGGGCCAAATCGATTTTAATGACAAAAATAGCTGGGAATTTCTTTTCAAGGAGTACTGGACAGATCTGAAGGGAAGCCTTTCTCTAACTTTTGACGAACTTGTTCACGCAAAAAACCCATGGAAAGGATCTGAGACACTAACTAGCAGACCTGATTCACCTGGTGAGCTATGTGATGGTAATGTTGATGGAGGATCAGATTTGGATGTTTCTGAAAATGAAGAATCTGGTAGTTCTAAGAAAAGAAAAGCTAAGAAAAGGTCAAAAGCTCAAGCAAAGGAAATGAGTTCACCTAGTATGCCAGCTATACCTGATTCTCAAGGGCTATCCACGGATAACAATGTTGAGTGGGCATCTAAAGAGCTCTTGGAGTTTGTAATGCACATGAAGAATGGTGATGGAACTGTTTTATCTCAGTTTGATGTGCAGGCTCTCTTATTAGAATATATTAAAAGGAATAAGCTTCGTGATCCTCGACGGAAAAGTCAGATCATATGTGATTCAAGACTTGAAAATTTGTTTGGAAAGCCACGTGTGGGACATTTTGAAATGTTGAAGCTCCTAGAGTCACACTTCCTCATCAAAGAGGATGCCCAGACAAATAATCTCCAAGGGAGTGTTGCTGATACCGAATCAAGTCAGTTGGAGGCTGATGGCACTGATGGATTGGGAAAGAATAAGAAAGAGAAAAAACGCAGGGCACGGAAAAAAGGTGATGAGAGAGGATTGCAGTCTAACCTTGATGACTATGCAGCCATTGATATTCACAACATTAATTTAATTTACTTAAAGCGCAATTTGGTGGAATATCTGATTGAGGATGAGGAGAGTTTTCATGACAAGGTTGTTGGTTCTTTTGTGAGGATAAGAATATCAGGCAGTGCACAAAAACAAGATTTATATCGGCTGGTTCAAGTTGTTGGTACTAGCAAAGCATCCGAGCCTTATAAAATTGGTAAAAAGATGACCGATATCTTGCTAGAGATCTTGAATTTGAACAAGACAGAAGTGATTTCAATTGATATTATCTCAAATCAAGAGTTCACGGAGGAGGAGTGCAAGCGTCTCAGACAAAGCATTAAGTGTGGAATCCTTAACCGTTTGACAGTGGGTGACCTCCAGGAGAGAGCAATGTCGCTTCAAGATGCCAGAGTTAAGGATTGGATGGAAACCGAGATAGTTCGACTGAGTCATCTTCGTGATCGAGCAAGTGAGAAAGGCCGCCGAAAAGAATATCCTTTTTTCCTTTTGAAGACACCTGAGGAGCGGCAGCGCAGAATTGAGGAAATACCAGAAATACATGCTGACCCAAATATGGATCCGAGTCATGAATCAGAAGATGAAGATGAAGCAGATGATAAGAGACGAGGAAACTACACCTTGTCAAGAAGTACAAGCTTTGGCAGGAGGATGAGGGAGCCAGTTTCTCCTGGAAAAGGAGGTTCAAATTTGAATGATTCCTGGAGCGGGACTAGAAACTTTTCTAACACGAATCGGGACTTGAGCAGGAACTTGTCTGGCAAAGGCTTCTCTAATCAAGGAGACGATGCCATTGGTTCTGGTGAAATAATAAACGAAAATTCATGGGGTCAAGGAAGAGAGAGAGATGTTAAGAAAACAAACAAGTGGGACAAACAACAAGTTTCACCTAGTTCAGAAATCCCTGCTAGAAATGCCTCGTCTGGGGCCGCATCTGAGTTGTCTTCTGCTGTTCACTCGGTAAATCCAGCAGGATCTCCATCTGTGGGGACTACACAGAATGCTGCTACGGTTAATGAATCAGAGAAGATATGGCGTTATCAGGATCCTTCTGGGAAAGTGCAGGGACCGTTTTCAATGGTGCAACTGCGTAAGTGGAGTAACACAGGTTATTTTCCTGCAGATTTGAGAGTATGGAGAACCTCAGACAAGCAAGAGGACTCCTTACTTTTGACCGATGTCTTAGCGGGAAAGATCCTGAAGGACACTCCATTGACGAGTAACAGTTTCCATGCACAGTCGAATTCTTCTTCATTTGTTGGGAAGCCTCAGGGAGCCACTTTGCAGTCAGGTATGGATGGTCAGAATGCTGGCACTTCAAATTCACATACTAATCCAACTTCTTATGACCAATCTTCTGGAGGAAGATGGAAATCTCAAAATGAAGTTAGCCCTACTGGTCGACCTGCCTCGGCTTCTATAGAAGTCCCCAGGTATTCAGGAGATAGATGGTCTTCTGACCATGGTAATAAGAATTTCACAAGTCTTCCTTCTCCTACTCCCAGCTCAGGAGGAACGAAGGAGCAGCCGTTTCAAGTGGCTGCGTCGTTCATGGAGGCGAAATCACTCTCAGGAGGTGGTAGTGGTTTGCACGGTTCTTCACTTATGCAAGGGTCTGAAAATGACTCGTTGCGCTCACATCCAGTCCGGAATTCATCAGAAAAGGGCATGGGTTTAGGTACTATAAATGCACTCCAAAATCATCATTCTCAGCCAGTAAGGCAATCACCTAGCATTGATGATGCTTTAGTCAATCCAGCTGCAGATATTAAAAGCATTAGCGCAAATCTTCATAGTTTAGTACAATCCATCAACAGTCGTAATCCTCCTATTGAAGCTCAAGGACACGGGTCCGTTCTGAAACGGGAAACAAATACTTCAGAGGCGTGGCAAAATGCACAATCTCTCAAAGCTGAATCAAACATTTCTTCTAGCATGCCACCAGCACAAACTCTTCACAGTCGTTGGGGGGAGATGTCGCCTGCACAAAATGCTGCTACGTCGTTCAGTGCAGGAAGTTCAACATCAAGTTTTTCCTCACCCGGTTTGTCCAGTTTTCCATCCTCCGACCCTTGGCGATCTACACCTCCTATTCCCAGTAACCTGCAACACATGCAGTCTTCAACTCCACCCAATCTACCTTGGGGAATGGGTGCTCCAGAAGGTCAAAGTACCGTTCCACGACCAGGTTCGGAGCCTCAGAACCAAGCCTGGGGACCAATGCCATCAGGAAATCCAAACATGGGTTGGGGTCCAACAGCACCACCTCCAAATGCTACTGGTATGATGTGGGGAACTGCTGCTCAAAGTTCTGGTCCTGCAGGTACAAACCCAGGTTGGATTGCACCAGGTCAAGGGCCACCAGCAGGAAACAACATTCAAGGATGGCCAGCACACAGCCCAATGCCACCTCCGGTAAACGCAACTCCAGGATGGGTTGCCCCTAATGTTGCACCGATGCCACCTATGAATCTGAATCCCAGTTGGCCCGTCCCATCCGCTAATCAGAACATGTGGGGTAATGAACATGGTAAAAATGGGGATAGATTCTCGAACCAAAAGGATGGTGGCTCTCATGGCGGAGATCCTGGGAATGGAGGGAAATCTTGGGGGATGCAACAATCTTTTGGTGGTGGTGGGAATTCTAGGTCTCCTTACAATAGAGTGCAAAAACTTTGCAAATACCATGAAAGTGGACATTGCAAGAAAGGAGGTACTTGTGATTACAGGCACAAGTAG 5382 45.26 MEAEEDDSSYHDPKSSLYVDDGNLDVKCDTNRELQSNEEQHCVSKSSIMETEFSPNTGVESLPPRDAILGDEILAVDTYSEMEKKDLVEETEIAGEKGFRNIIEDMAEDSVKLEIEPDIAETGLLGQRVFADVKKNTGVSEEERALSEFAEGELLPEMVLVGDAENQVEGNVLMANFSEDTVVEGSATVGCAETNEKTCLIDVLAEETLAETTLFVQDVDVTDATNLVKKTEVEENADDPNDSKDTEVPKQENFGVEERQLGVPVQLAENSELKVSSVDGAVVEEGQSTNLADRTGETLKMNVSSTIDEVGVTHFAGEINEAVNIGNAEDKTIEMGGMCVYDKATDVAMMENLADESPGIKGVELADYTIEELKIENVEDREAGVQGLGVADESPVVGKLENMADETAEAEEVQVTDYTAEDVQSENVEEDKTVQGEDIAMAEESAEADDVVYLVDEGIGSEETDANMAYLVEEAEAAEEIEEMDVTEEVDEPNKGSSGSKRKRGKNSKAPARVPSRKKVEEDVCFICFDGGDLVLCDRRGCPKAYHPACINRDEAFFRAKGRWNCGWHLCSNCEKTAHYMCYTCTFSLCKGCIKNAVILCVRGNKGFCETCMRFVMLIEKNEQGNTEKGQIDFNDKNSWEFLFKEYWTDLKGSLSLTFDELVHAKNPWKGSETLTSRPDSPGELCDGNVDGGSDLDVSENEESGSSKKRKAKKRSKAQAKEMSSPSMPAIPDSQGLSTDNNVEWASKELLEFVMHMKNGDGTVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDSRLENLFGKPRVGHFEMLKLLESHFLIKEDAQTNNLQGSVADTESSQLEADGTDGLGKNKKEKKRRARKKGDERGLQSNLDDYAAIDIHNINLIYLKRNLVEYLIEDEESFHDKVVGSFVRIRISGSAQKQDLYRLVQVVGTSKASEPYKIGKKMTDILLEILNLNKTEVISIDIISNQEFTEEECKRLRQSIKCGILNRLTVGDLQERAMSLQDARVKDWMETEIVRLSHLRDRASEKGRRKEYPFFLLKTPEERQRRIEEIPEIHADPNMDPSHESEDEDEADDKRRGNYTLSRSTSFGRRMREPVSPGKGGSNLNDSWSGTRNFSNTNRDLSRNLSGKGFSNQGDDAIGSGEIINENSWGQGRERDVKKTNKWDKQQVSPSSEIPARNASSGAASELSSAVHSVNPAGSPSVGTTQNAATVNESEKIWRYQDPSGKVQGPFSMVQLRKWSNTGYFPADLRVWRTSDKQEDSLLLTDVLAGKILKDTPLTSNSFHAQSNSSSFVGKPQGATLQSGMDGQNAGTSNSHTNPTSYDQSSGGRWKSQNEVSPTGRPASASIEVPRYSGDRWSSDHGNKNFTSLPSPTPSSGGTKEQPFQVAASFMEAKSLSGGGSGLHGSSLMQGSENDSLRSHPVRNSSEKGMGLGTINALQNHHSQPVRQSPSIDDALVNPAADIKSISANLHSLVQSINSRNPPIEAQGHGSVLKRETNTSEAWQNAQSLKAESNISSSMPPAQTLHSRWGEMSPAQNAATSFSAGSSTSSFSSPGLSSFPSSDPWRSTPPIPSNLQHMQSSTPPNLPWGMGAPEGQSTVPRPGSEPQNQAWGPMPSGNPNMGWGPTAPPPNATGMMWGTAAQSSGPAGTNPGWIAPGQGPPAGNNIQGWPAHSPMPPPVNATPGWVAPNVAPMPPMNLNPSWPVPSANQNMWGNEHGKNGDRFSNQKDGGSHGGDPGNGGKSWGMQQSFGGGGNSRSPYNRVQKLCKYHESGHCKKGGTCDYRHK 1793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5069192 5082810 + CrPI670011_02g008290.1 Cre02g0829 490110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0829 1793 MobiDBLite consensus disorder prediction 1059 1217 - -
Cre02g0829 1793 CDD PHD5_NSD 524 569 - -
Cre02g0829 1793 MobiDBLite consensus disorder prediction 1367 1389 - -
Cre02g0829 1793 MobiDBLite consensus disorder prediction 832 869 - -
Cre02g0829 1793 SUPERFAMILY SWIB/MDM2 domain 741 821 IPR036885 -
Cre02g0829 1793 MobiDBLite consensus disorder prediction 1488 1641 - -
Cre02g0829 1793 MobiDBLite consensus disorder prediction 1721 1767 - -
Cre02g0829 1793 CDD SWIB-MDM2_like 745 820 - -
Cre02g0829 1793 SUPERFAMILY Plus3-like 881 1011 IPR036128 GO:0003677(InterPro)
Cre02g0829 1793 FunFam Zinc finger CCCH domain-containing protein 19 881 1010 - -
Cre02g0829 1793 ProSiteProfiles SWIB/MDM2 domain profile. 739 822 IPR003121 -
Cre02g0829 1793 CDD Bbox1 570 595 - -
Cre02g0829 1793 MobiDBLite consensus disorder prediction 230 255 - -
Cre02g0829 1793 SMART rtf1 880 990 IPR004343 GO:0003677(InterPro)
Cre02g0829 1793 MobiDBLite consensus disorder prediction 832 847 - -
Cre02g0829 1793 MobiDBLite consensus disorder prediction 479 515 - -
Cre02g0829 1793 SMART swib_2 740 825 IPR019835 -
Cre02g0829 1793 Pfam Plus-3 domain 885 988 IPR004343 GO:0003677(InterPro)
Cre02g0829 1793 ProSiteProfiles GYF domain profile. 1223 1277 IPR003169 GO:0005515(InterPro)
Cre02g0829 1793 MobiDBLite consensus disorder prediction 1608 1623 - -
Cre02g0829 1793 MobiDBLite consensus disorder prediction 1408 1427 - -
Cre02g0829 1793 Pfam SWIB/MDM2 domain 747 820 IPR003121 -
Cre02g0829 1793 PANTHER UNCHARACTERIZED 248 1792 - GO:0016593(PANTHER)|GO:1990269(PANTHER)
Cre02g0829 1793 MobiDBLite consensus disorder prediction 670 739 - -
Cre02g0829 1793 Pfam GYF domain 1226 1266 IPR003169 GO:0005515(InterPro)
Cre02g0829 1793 MobiDBLite consensus disorder prediction 1292 1349 - -
Cre02g0829 1793 MobiDBLite consensus disorder prediction 1108 1141 - -
Cre02g0829 1793 ProSitePatterns Zinc finger PHD-type signature. 525 585 IPR019786 -
Cre02g0829 1793 SUPERFAMILY FYVE/PHD zinc finger 520 569 IPR011011 -
Cre02g0829 1793 SMART gyf_5 1224 1279 IPR003169 GO:0005515(InterPro)
Cre02g0829 1793 ProSiteProfiles Zinc finger C3H1-type profile. 1768 1793 IPR000571 GO:0046872(InterPro)
Cre02g0829 1793 MobiDBLite consensus disorder prediction 1749 1767 - -
Cre02g0829 1793 ProSiteProfiles Zinc finger PHD-type profile. 522 588 IPR019787 -
Cre02g0829 1793 SUPERFAMILY GYF domain 1214 1276 IPR035445 -
Cre02g0829 1793 MobiDBLite consensus disorder prediction 1292 1389 - -
Cre02g0829 1793 FunFam Zinc finger CCCH domain-containing protein 19 514 614 - -
Cre02g0829 1793 MobiDBLite consensus disorder prediction 1172 1217 - -
Cre02g0829 1793 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 615 IPR013083 -
Cre02g0829 1793 ProSiteProfiles Plus3 domain profile. 880 1013 IPR004343 GO:0003677(InterPro)
Cre02g0829 1793 SMART PHD_3 524 570 IPR001965 -
Cre02g0829 1793 MobiDBLite consensus disorder prediction 1157 1171 - -
Cre02g0829 1793 MobiDBLite consensus disorder prediction 230 254 - -
Cre02g0829 1793 MobiDBLite consensus disorder prediction 1500 1594 - -
Cre02g0829 1793 Gene3D - 881 1011 IPR036128 GO:0003677(InterPro)
Cre02g0829 1793 MobiDBLite consensus disorder prediction 1 22 - -
Cre02g0829 1793 Gene3D SWIB/MDM2 domain 735 830 IPR036885 -
Cre02g0829 1793 MobiDBLite consensus disorder prediction 1403 1440 - -
Cre02g0829 1793 CDD GYF 1223 1278 IPR003169 GO:0005515(InterPro)
Cre02g0829 1793 Gene3D - 1225 1279 IPR035445 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0829 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0829 Cre-Chr2:5069192 Cre07g1252 Cre-Chr7:26221939 6.80E-166 dispersed
Cre02g0829 Cre-Chr2:5069192 Cre10g2081 Cre-Chr10:35486016 7.10E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g38 . . . . . . . . Cmo19g00701 . . . . . Sed05g2290 Cpe04g00103 Cpe15g00561 Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . Cla02g00488 Cam02g0497 Cec02g0498 Cco02g0503 Clacu02g0501 Cmu02g0496 Cre02g0829 Cone12ag1185 Cone8ag1230 . . . Csa07g00034 . Cme01g01347 Blo04g00538 . . . Bpe15g00843 . . . . . . . . . Car19g00533 . . . . . . . . . Cla02g01127 Cam02g1202 Cec02g1205 Cco02g1255 Clacu02g1191 Cmu02g1153 Cre02g1463 . . Chy01g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53110 PF03126 Plus-3 1.40E-24 No_clan Cre TR