Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0833 ATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGTTATGCTGATGAAGCTGCTCTTTGCCATGGTTGCGATCTCCATGTTCATCGCGCTAATAAGCTCGCTGGAAAACACTCTCGATTCTCTTTACTTCACCCGATCAAAAAGGATTCTCCTCGTTGCGATATCTGTCAGGAACGGCGCGCGCTTGTATTCTGTCAACAAGATAGGGCAATTCTTTGCAGAGAATGCGACATTTCGATTCACGAAGCGAACGAACATACACAGAAGCACAATCGATTTCTTCTTACCGGTGTGAAGCTTTCTTCGACTTGTCATTCGTATCAAACATCTTCGTCCTCCAATGGCTGTGATGCCGCCATGGATGTTAAAACTGGAAGCTCCAACGCTTGCAGCAAAAGACCTAAAATGGCCGCGAACGAAATCTCCAGCTCTCATTCCGCTGAAAAAGCTACTCCGTCGACAAGTAATTACAAGGTTGAAGACGGCCAAGCATTAAGCGACGGCGGTTCGTTCTCGACAAGCAGCATATCGGAATATTTAGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTTGATCCTTCCGCCGCTGCCAATCGTTTCTGTAAGTTTAATGGCGAAATTCTTGGATTTGGGAATCAAAATCTGGAAAGGCAACAAGAATCACTAAGCACTCTCAAGAACACCTTGGAAATTTTAGGTAAAAATTCTCAATTTATTACTACTAGGTGTTGGAATGGAATACTTGGGATCTCCATGAAAACTTGTAAAGATGAAAAAATGCAACAGTGGGTGATCTGA 816 44.24 MKIRCDVCDQAEASVFCYADEAALCHGCDLHVHRANKLAGKHSRFSLLHPIKKDSPRCDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHNRFLLTGVKLSSTCHSYQTSSSSNGCDAAMDVKTGSSNACSKRPKMAANEISSSHSAEKATPSTSNYKVEDGQALSDGGSFSTSSISEYLETLPGWCVEEFLDPSAAANRFCKFNGEILGFGNQNLERQQESLSTLKNTLEILGKNSQFITTRCWNGILGISMKTCKDEKMQQWVI 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5117104 5118198 - CrPI670011_02g008330.1 Cre02g0833 490114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0833 271 CDD Bbox1_BBX-like 58 100 IPR049808 -
Cre02g0833 271 Coils Coil 218 241 - -
Cre02g0833 271 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 218 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cre02g0833 271 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cre02g0833 271 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Cre02g0833 271 MobiDBLite consensus disorder prediction 142 164 - -
Cre02g0833 271 Gene3D Classic Zinc Finger 1 100 - -
Cre02g0833 271 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
Cre02g0833 271 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270(InterPro)
Cre02g0833 271 FunFam B-box zinc finger protein 21 1 98 - -
Cre02g0833 271 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cre02g0833 271 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cre02g0833 271 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0833 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0833 Cre-Chr2:5117104 Cre09g1473 Cre-Chr9:28915774 6.50E-36 dispersed
Cre11g0890 Cre-Chr11:6083189 Cre02g0833 Cre-Chr2:5117104 4.90E-46 wgd
Cre02g0833 Cre-Chr2:5117104 Cre08g1404 Cre-Chr8:27022092 1.50E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g18 . . Bda06g00954 Bda08g00955 . . . Bma12g00543 . . . Cma20g00817 . Car20g00702 . Cpe04g00107 Cpe15g00559 . . . . . . . Cla02g00492 Cam02g0502 Cec02g0502 Cco02g0508 Clacu02g0505 Cmu02g0501 Cre02g0833 . . Cone3ag1218 Cone10ag1103 Lsi10g00408 Csa07g00027 Chy11g00343 Cme01g01353 Blo04g00532 . . Bda14g00574 Bpe15g00849 Bpe05g00323 . . Sed05g3539 . Cmo20g00825 . Cma19g00687 . . Cpe16g00269 . Bhi10g01956 Tan05g1250 Cmetu11g0516 . Hepe08g0983 . . . . . . . . . . Csa02g01300 . Cme11g00162
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1331 . 6 337 C2C2-CO-like Transcription Factor Family AT5G15850 50.6 1.8e-41 167.2
Cre08g1331 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.7 3.9e-84 308.9
Cre06g2174 . 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 51.2 3.6e-58 222.6
Cre06g2174 . 1 375 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 5.0e-68 255.4
Cre08g1331 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 5.3e-54 208.8
Cre02g1391 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.2 1.1e-89 327.4
Cre02g0639 . 83 489 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 1.8e-89 326.6
Cre02g1391 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 1.7e-87 320.1
Cre02g0639 . 83 489 C2C2-CO-like Transcription Factor Family AT5G48250 55.0 5.5e-86 315.1
Cre02g1391 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 1.7e-87 320.1
Cre02g0639 . 83 489 C2C2-CO-like Transcription Factor Family AT5G48250 55.0 5.5e-86 315.1
Cre02g0833 . 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 55.2 1.8e-51 200.3
Cre11g0890 . 1 184 C2C2-CO-like Transcription Factor Family AT1G75540 52.5 1.5e-42 170.6
Cre07g1378 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.3 3.4e-76 282.3
Cre07g1192 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 1.0e-55 213.4
Cre04g1625 . 1 107 C2C2-CO-like Transcription Factor Family AT2G21320 81.3 6.2e-48 187.6
Cre07g1192 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 7.0e-58 220.7
Cre04g1625 . 1 107 C2C2-CO-like Transcription Factor Family AT4G38960 82.2 1.3e-48 189.9
Cre02g0833 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 60.9 1.7e-56 216.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53111 PF00643 zf-B_box 3.30E-07 No_clan Cre TF