Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0833 ATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGTTATGCTGATGAAGCTGCTCTTTGCCATGGTTGCGATCTCCATGTTCATCGCGCTAATAAGCTCGCTGGAAAACACTCTCGATTCTCTTTACTTCACCCGATCAAAAAGGATTCTCCTCGTTGCGATATCTGTCAGGAACGGCGCGCGCTTGTATTCTGTCAACAAGATAGGGCAATTCTTTGCAGAGAATGCGACATTTCGATTCACGAAGCGAACGAACATACACAGAAGCACAATCGATTTCTTCTTACCGGTGTGAAGCTTTCTTCGACTTGTCATTCGTATCAAACATCTTCGTCCTCCAATGGCTGTGATGCCGCCATGGATGTTAAAACTGGAAGCTCCAACGCTTGCAGCAAAAGACCTAAAATGGCCGCGAACGAAATCTCCAGCTCTCATTCCGCTGAAAAAGCTACTCCGTCGACAAGTAATTACAAGGTTGAAGACGGCCAAGCATTAAGCGACGGCGGTTCGTTCTCGACAAGCAGCATATCGGAATATTTAGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTTGATCCTTCCGCCGCTGCCAATCGTTTCTGTAAGTTTAATGGCGAAATTCTTGGATTTGGGAATCAAAATCTGGAAAGGCAACAAGAATCACTAAGCACTCTCAAGAACACCTTGGAAATTTTAGGTAAAAATTCTCAATTTATTACTACTAGGTGTTGGAATGGAATACTTGGGATCTCCATGAAAACTTGTAAAGATGAAAAAATGCAACAGTGGGTGATCTGA 816 44.24 MKIRCDVCDQAEASVFCYADEAALCHGCDLHVHRANKLAGKHSRFSLLHPIKKDSPRCDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHNRFLLTGVKLSSTCHSYQTSSSSNGCDAAMDVKTGSSNACSKRPKMAANEISSSHSAEKATPSTSNYKVEDGQALSDGGSFSTSSISEYLETLPGWCVEEFLDPSAAANRFCKFNGEILGFGNQNLERQQESLSTLKNTLEILGKNSQFITTRCWNGILGISMKTCKDEKMQQWVI 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5117104 5118198 - CrPI670011_02g008330.1 Cre02g0833 490114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0833 271 CDD Bbox1_BBX-like 58 100 IPR049808 -
Cre02g0833 271 Coils Coil 218 241 - -
Cre02g0833 271 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 218 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cre02g0833 271 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cre02g0833 271 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Cre02g0833 271 MobiDBLite consensus disorder prediction 142 164 - -
Cre02g0833 271 Gene3D Classic Zinc Finger 1 100 - -
Cre02g0833 271 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
Cre02g0833 271 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270(InterPro)
Cre02g0833 271 FunFam B-box zinc finger protein 21 1 98 - -
Cre02g0833 271 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cre02g0833 271 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cre02g0833 271 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0833 Cre-Chr2:5117104 Cre09g1473 Cre-Chr9:28915774 6.50E-36 dispersed
Cre11g0890 Cre-Chr11:6083189 Cre02g0833 Cre-Chr2:5117104 4.90E-46 wgd
Cre02g0833 Cre-Chr2:5117104 Cre08g1404 Cre-Chr8:27022092 1.50E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53111 PF00643 zf-B_box 3.30E-07 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0833 - - - 0.0