Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0851 ATGAACAGAGCATTACCGGAGATGTTGCATTGTTTGAACACTACCGGGAACTGTCCTGATACTCTCAGTGTTCTTGAGAGGCAGAGAGCTCGTTTGAAATGGCAGCAAGATCAGCTTTTGCAGCAGCAACAGCAGCCATTGAATCAGAGCTGTTTCAATAAGGTTGACTACGGCGGTGGATTTCCGCCGCCGGTGGCTGTTCCAGCGGATCACTTCACGGGGTTTCCTGGGTACATGAGTGGCGGCGGCGGCGGTGGAGGTGGTGGATTGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGCCTGACCCTGGGTTGAATGATGGGTGGTCTGAAATGGGAAAGTTTGATCCTTCTTTGTTGTTGAATGCCACTGCTTATGAGCTCAATTCTTCTCTCTCTAGAACCTCCAGCTGCCCGCCGGCAGTGGCTCCGACGGTGGCGGAGAAGATGGGGTCGGCGGCTGGAAGAGATAGCTTCAAGAAAAGGAAAGCTGAGAAAGTTCACAACACTACCACCACCACCACCACCACCACCACCAACAACAACAACAATAGCAAGGTGACTGTGGAAGAAGATAACAACAACAGCAGCAGCAAGGAGAAGAGGATCAAAGCAAGTTCAGAAGAAGGAGAATTATCCAAAACCACAGATCAAAACAGTACCAAAAACAACTCAACCACCACAACCACAACAAACAATAACAGAGAAACTTCAGCTGATACCTCAAAAGAAAACTCCAAAGCTTCAGAGGTTCAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCTACTGATAGCCATAGCTTAGCTGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGACGAGATCATAAACTATGTCCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAGTTAGCTGCTGTTAATCCAAGGTTGGACTTCAATGGCGATGATCTCTTCAACAAAGAGGTTTTTCCCCCATCTTGCACCACCGCGAACTTCCCGACGATCGGCGGAATGTCATCGGAGATGACAGATCCTTCTTCCTACTTACAATTCAATCCAAATAATCAACAAATGGTCTCGTGTTGTGGATTAGAAATGGGAATCAATACCTCCGATGTCGCCGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAAACTTTCCTCGATTCATCTTGCCTCACCCAATTTCAACCCTCTTCAGGGTGGGATGTGGATTTGCAGAATCTGTACAACGTGGGTTTCGATCAAGGAAGATCATCAAACGCCTTTTCATCTCAACCATATACAGGTTCAATTGAAGGAGGCATTATAAAGATGGAAATGTGA 1407 46.62 MNRALPEMLHCLNTTGNCPDTLSVLERQRARLKWQQDQLLQQQQQPLNQSCFNKVDYGGGFPPPVAVPADHFTGFPGYMSGGGGGGGGGLSLVEMVMGAVKPDPGLNDGWSEMGKFDPSLLLNATAYELNSSLSRTSSCPPAVAPTVAEKMGSAAGRDSFKKRKAEKVHNTTTTTTTTTTNNNNNSKVTVEEDNNNSSSKEKRIKASSEEGELSKTTDQNSTKNNSTTTTTTNNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNGDDLFNKEVFPPSCTTANFPTIGGMSSEMTDPSSYLQFNPNNQQMVSCCGLEMGINTSDVAALRRTISAPVSFPETFLDSSCLTQFQPSSGWDVDLQNLYNVGFDQGRSSNAFSSQPYTGSIEGGIIKMEM 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5344030 5346844 - CrPI670011_02g008510.1 Cre02g0851 490132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0851 468 MobiDBLite consensus disorder prediction 213 240 - -
Cre02g0851 468 Gene3D - 263 336 IPR036638 GO:0046983(InterPro)
Cre02g0851 468 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 316 IPR011598 GO:0046983(InterPro)
Cre02g0851 468 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 156 383 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cre02g0851 468 MobiDBLite consensus disorder prediction 148 255 - -
Cre02g0851 468 MobiDBLite consensus disorder prediction 241 255 - -
Cre02g0851 468 Pfam Helix-loop-helix DNA-binding domain 270 317 IPR011598 GO:0046983(InterPro)
Cre02g0851 468 SMART finulus 272 322 IPR011598 GO:0046983(InterPro)
Cre02g0851 468 FunFam Basic helix-loop-helix transcription factor 263 335 - -
Cre02g0851 468 MobiDBLite consensus disorder prediction 194 212 - -
Cre02g0851 468 Coils Coil 22 45 - -
Cre02g0851 468 MobiDBLite consensus disorder prediction 155 169 - -
Cre02g0851 468 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 335 IPR036638 GO:0046983(InterPro)
Cre02g0851 468 CDD bHLH_AtBPE_like 256 341 - -
Cre02g0851 468 MobiDBLite consensus disorder prediction 170 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0851 Cre-Chr2:5344030 Cre03g0692 Cre-Chr3:5832425 5.80E-32 dispersed
Cre05g0877 Cre-Chr5:7886855 Cre02g0851 Cre-Chr2:5344030 3.30E-39 transposed
Cre05g2509 Cre-Chr5:36511011 Cre02g0851 Cre-Chr2:5344030 5.10E-37 transposed
Cre05g2818 Cre-Chr5:38880627 Cre02g0851 Cre-Chr2:5344030 4.00E-35 transposed
Cre06g2524 Cre-Chr6:32895877 Cre02g0851 Cre-Chr2:5344030 1.10E-33 transposed
Cre08g0849 Cre-Chr8:21595971 Cre02g0851 Cre-Chr2:5344030 1.20E-33 transposed
Cre08g1617 Cre-Chr8:28658372 Cre02g0851 Cre-Chr2:5344030 2.00E-29 transposed
Cre09g0809 Cre-Chr9:8075744 Cre02g0851 Cre-Chr2:5344030 4.80E-37 transposed
Cre09g1800 Cre-Chr9:36444904 Cre02g0851 Cre-Chr2:5344030 1.20E-41 transposed
Cre10g1844 Cre-Chr10:33003441 Cre02g0851 Cre-Chr2:5344030 9.90E-35 transposed
Cre11g0923 Cre-Chr11:6485577 Cre02g0851 Cre-Chr2:5344030 3.10E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53113 PF00010 HLH 1.30E-06 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0851 - - - 0.0