Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre02g0851 | ATGAACAGAGCATTACCGGAGATGTTGCATTGTTTGAACACTACCGGGAACTGTCCTGATACTCTCAGTGTTCTTGAGAGGCAGAGAGCTCGTTTGAAATGGCAGCAAGATCAGCTTTTGCAGCAGCAACAGCAGCCATTGAATCAGAGCTGTTTCAATAAGGTTGACTACGGCGGTGGATTTCCGCCGCCGGTGGCTGTTCCAGCGGATCACTTCACGGGGTTTCCTGGGTACATGAGTGGCGGCGGCGGCGGTGGAGGTGGTGGATTGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGCCTGACCCTGGGTTGAATGATGGGTGGTCTGAAATGGGAAAGTTTGATCCTTCTTTGTTGTTGAATGCCACTGCTTATGAGCTCAATTCTTCTCTCTCTAGAACCTCCAGCTGCCCGCCGGCAGTGGCTCCGACGGTGGCGGAGAAGATGGGGTCGGCGGCTGGAAGAGATAGCTTCAAGAAAAGGAAAGCTGAGAAAGTTCACAACACTACCACCACCACCACCACCACCACCACCAACAACAACAACAATAGCAAGGTGACTGTGGAAGAAGATAACAACAACAGCAGCAGCAAGGAGAAGAGGATCAAAGCAAGTTCAGAAGAAGGAGAATTATCCAAAACCACAGATCAAAACAGTACCAAAAACAACTCAACCACCACAACCACAACAAACAATAACAGAGAAACTTCAGCTGATACCTCAAAAGAAAACTCCAAAGCTTCAGAGGTTCAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCTACTGATAGCCATAGCTTAGCTGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGACGAGATCATAAACTATGTCCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAGTTAGCTGCTGTTAATCCAAGGTTGGACTTCAATGGCGATGATCTCTTCAACAAAGAGGTTTTTCCCCCATCTTGCACCACCGCGAACTTCCCGACGATCGGCGGAATGTCATCGGAGATGACAGATCCTTCTTCCTACTTACAATTCAATCCAAATAATCAACAAATGGTCTCGTGTTGTGGATTAGAAATGGGAATCAATACCTCCGATGTCGCCGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAAACTTTCCTCGATTCATCTTGCCTCACCCAATTTCAACCCTCTTCAGGGTGGGATGTGGATTTGCAGAATCTGTACAACGTGGGTTTCGATCAAGGAAGATCATCAAACGCCTTTTCATCTCAACCATATACAGGTTCAATTGAAGGAGGCATTATAAAGATGGAAATGTGA | 1407 | 46.62 | MNRALPEMLHCLNTTGNCPDTLSVLERQRARLKWQQDQLLQQQQQPLNQSCFNKVDYGGGFPPPVAVPADHFTGFPGYMSGGGGGGGGGLSLVEMVMGAVKPDPGLNDGWSEMGKFDPSLLLNATAYELNSSLSRTSSCPPAVAPTVAEKMGSAAGRDSFKKRKAEKVHNTTTTTTTTTTNNNNNSKVTVEEDNNNSSSKEKRIKASSEEGELSKTTDQNSTKNNSTTTTTTNNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNGDDLFNKEVFPPSCTTANFPTIGGMSSEMTDPSSYLQFNPNNQQMVSCCGLEMGINTSDVAALRRTISAPVSFPETFLDSSCLTQFQPSSGWDVDLQNLYNVGFDQGRSSNAFSSQPYTGSIEGGIIKMEM | 468 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 5344030 | 5346844 | - | CrPI670011_02g008510.1 | Cre02g0851 | 490132 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre02g0851 | 468 | MobiDBLite | consensus disorder prediction | 213 | 240 | - | - | |
Cre02g0851 | 468 | Gene3D | - | 263 | 336 | IPR036638 | GO:0046983(InterPro) | |
Cre02g0851 | 468 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 266 | 316 | IPR011598 | GO:0046983(InterPro) | |
Cre02g0851 | 468 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 156 | 383 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Cre02g0851 | 468 | MobiDBLite | consensus disorder prediction | 148 | 255 | - | - | |
Cre02g0851 | 468 | MobiDBLite | consensus disorder prediction | 241 | 255 | - | - | |
Cre02g0851 | 468 | Pfam | Helix-loop-helix DNA-binding domain | 270 | 317 | IPR011598 | GO:0046983(InterPro) | |
Cre02g0851 | 468 | SMART | finulus | 272 | 322 | IPR011598 | GO:0046983(InterPro) | |
Cre02g0851 | 468 | FunFam | Basic helix-loop-helix transcription factor | 263 | 335 | - | - | |
Cre02g0851 | 468 | MobiDBLite | consensus disorder prediction | 194 | 212 | - | - | |
Cre02g0851 | 468 | Coils | Coil | 22 | 45 | - | - | |
Cre02g0851 | 468 | MobiDBLite | consensus disorder prediction | 155 | 169 | - | - | |
Cre02g0851 | 468 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 264 | 335 | IPR036638 | GO:0046983(InterPro) | |
Cre02g0851 | 468 | CDD | bHLH_AtBPE_like | 256 | 341 | - | - | |
Cre02g0851 | 468 | MobiDBLite | consensus disorder prediction | 170 | 193 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g0851 | Cre-Chr2:5344030 | Cre03g0692 | Cre-Chr3:5832425 | 5.80E-32 | dispersed | |
Cre05g0877 | Cre-Chr5:7886855 | Cre02g0851 | Cre-Chr2:5344030 | 3.30E-39 | transposed | |
Cre05g2509 | Cre-Chr5:36511011 | Cre02g0851 | Cre-Chr2:5344030 | 5.10E-37 | transposed | |
Cre05g2818 | Cre-Chr5:38880627 | Cre02g0851 | Cre-Chr2:5344030 | 4.00E-35 | transposed | |
Cre06g2524 | Cre-Chr6:32895877 | Cre02g0851 | Cre-Chr2:5344030 | 1.10E-33 | transposed | |
Cre08g0849 | Cre-Chr8:21595971 | Cre02g0851 | Cre-Chr2:5344030 | 1.20E-33 | transposed | |
Cre08g1617 | Cre-Chr8:28658372 | Cre02g0851 | Cre-Chr2:5344030 | 2.00E-29 | transposed | |
Cre09g0809 | Cre-Chr9:8075744 | Cre02g0851 | Cre-Chr2:5344030 | 4.80E-37 | transposed | |
Cre09g1800 | Cre-Chr9:36444904 | Cre02g0851 | Cre-Chr2:5344030 | 1.20E-41 | transposed | |
Cre10g1844 | Cre-Chr10:33003441 | Cre02g0851 | Cre-Chr2:5344030 | 9.90E-35 | transposed | |
Cre11g0923 | Cre-Chr11:6485577 | Cre02g0851 | Cre-Chr2:5344030 | 3.10E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53113 | PF00010 | HLH | 1.30E-06 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre02g0851 | - | - | - | 0.0 |