Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0874 ATGCCTTCCCGCAGAAGGACCCTTTTGAAGGTCATCATCCTTGGGGATAGCGGGGTGGGGAAGACCTCTTTGATGAACCAATATGTGAATAAGAAGTTTAGTAATCAATACAAGGCCACCATTGGAGCTGATTTTTTGACTAAGGAGGTGCAATTTGAAGATAGACTTTTCACTTTGCAGATATGGGATACAGCAGGCCAGGAACGATTTCAAAGTCTTGGTGTTGCTTTTTACCGAGGTGCTGATTGCTGTGTTCTGGTGTATGATGTCAATTCAATGAAATCATTTGACAGCCTTAACAACTGGCGGGAAGAATTCCTTATCCAGGCAAGCCCTTCCGATCCAGAAAATTTTCCCTTCGTTGTTTTAGGAAATAAAGTTGATGTTGATGGTGGAAACAGTAGAGTTGTTTCAGAGAAAAAGGCACGAGCTTGGTGTGCTTCAAAAGGAAATATCCCATACTTTGAAACTTCTGCCAAAGAAGGCATTAACGTAGAAGAAGCCTTCCAATGCATTGCCAAAAATGCCCTCAAGAGTGGGGAAGAGGAAGAGATATACTTACCCGACACCATCGATGTTGCGGGCAACAATCAGCCAAGATCATCTGGATGCGACTGCTGA 621 43.48 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDSLNNWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVAGNNQPRSSGCDC 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5699543 5702232 + CrPI670011_02g008740.1 Cre02g0874 490155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0874 206 SMART ras_sub_4 6 179 - -
Cre02g0874 206 SMART rab_sub_5 9 179 - -
Cre02g0874 206 SMART rho_sub_3 11 179 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g0874 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 181 IPR027417 -
Cre02g0874 206 Pfam Ras family 10 176 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g0874 206 Gene3D - 2 189 IPR027417 -
Cre02g0874 206 SMART ran_sub_2 14 206 - -
Cre02g0874 206 FunFam Ras-related protein Rab7 1 189 - -
Cre02g0874 206 ProSiteProfiles small GTPase Rab1 family profile. 3 206 - -
Cre02g0874 206 ProSiteProfiles small GTPase Ras family profile. 3 206 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g0874 206 ProSiteProfiles small GTPase Rho family profile. 2 180 - -
Cre02g0874 206 PRINTS Transforming protein P21 ras signature 9 30 - -
Cre02g0874 206 PRINTS Transforming protein P21 ras signature 116 129 - -
Cre02g0874 206 PRINTS Transforming protein P21 ras signature 154 176 - -
Cre02g0874 206 PRINTS Transforming protein P21 ras signature 32 48 - -
Cre02g0874 206 PRINTS Transforming protein P21 ras signature 50 72 - -
Cre02g0874 206 CDD Rab7 9 182 - -
Cre02g0874 206 PANTHER RAB FAMILY 1 202 - GO:0005774(PANTHER)
Cre02g0874 206 NCBIfam small GTP-binding protein domain 9 172 IPR005225 GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0874 K07897 - - csv:101218255 416.001
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0441 Cre-Chr2:1654965 Cre02g0874 Cre-Chr2:5699543 3.00E-12 dispersed
Cre02g0874 Cre-Chr2:5699543 Cre09g0190 Cre-Chr9:2093863 1.70E-108 dispersed
Cre02g0874 Cre-Chr2:5699543 Cre09g1251 Cre-Chr9:15931835 6.70E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g580 . . . . . Bpe12g00077 . . Cmo19g00673 . . . . . . . Cpe15g00533 Bhi05g01223 Tan02g0809 . . Hepe02g0515 . . Cla02g00529 Cam02g0547 Cec02g0548 Cco02g0554 Clacu02g0548 Cmu02g0543 Cre02g0874 Cone12ag1146 Cone8ag1194 Cone3ag1157 Cone10ag1166 Lsi10g00673 . . Cme01g01430 Blo04g00507 Blo13g00556 Bda15g00017 Bda14g00548 . . . . . . . . Cma19g00659 . Car19g00502 . Cpe01g00429 . . . . . . . . . . . . . . Lsi11g01095 . Chy01g00795 Cme11g00207
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001330 4 2 4 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 2 2 2 3 2 1 2 1 2 4 3 2 74