Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0892 ATGGCCATGGAAAATATGGGCAACCGGACTGCAATTTCTACCGCCCAGTTTGATCGGCAAACCCCACCGGAATCTGCCGTGCCGGAGAAGCTGAAGAGAAACAGATATGCTTTTATGTGTGCCGTTTTTGCTTCCACGGCTTCCATCTTACTGGGTTACGAGAAAAGTGTAATGGATGGAGGTGGAACACTAATGTTCATCCAAGAACACTTCAAACTCTCCGATTTGAGGGTGGAAATTCTTCTGGGTGTCGGCAATATCTATGCCGCCATCGGCGCAGCCATTGCTGGTAGAACCTCTGACTATATCGGCCGCCGTTACACCATGGTTCTTGTAGGTTTCATTTTCTTCTTTGGCGCTTTTCTCATGGGCTTTGCCACCAACTTTGTCTCCCTCATGCTGGGCCAATTCATCATTGGACTCGGCACCGGATACGCTTTTGTTGTATCCCCTGTCTACATTGCCGAGGTGTTCATAAACATTGGGTTTGTGTTGGGACATCTCTCCAACTTCCTTTTCTCTAAGCTTCCAATTCATTTGGATTGGCGATTCATGGTTGGAATTGGCCAAATTGGAAAAGCCAAGTGGGTCCTTGACAAAACCTCAGACTCCATGGAAGAGGCTGAACGAAGACTCGCAGATATCAAAGAAGCTAATGGAATACCAGCTGGCTACTCCTTAGACGAGGGCCTATCACGTGGGTATATGGCTCAGAAAGTTTTCCAACAAAGCTACGTGCCCAGGGACTTGAGTGCAGGAGCGATGGTAAATAGAGCTATGGCTGTGGTGGTCATAATGACATTTTGGTCCCTGTCCAATGCGATTACTGTCGGTGGGGTGCTTTTCTTATATGCAGGCCTTGCAACAATGTCTTGGGTGTTTTTCTACATCTTGTTTCCTGAGACACAAGGGAAGAATTTGGAGGACATGGATGGGCTTTTTGTATCTAACATTTGTCCAAAAGAAGAGAAGACATCCCCTGCTGCTGCCATGGCCATCGAAAATATGGGCACCCGGACTGCAATTTCCGGCCAGTTTGATCGGGAAATCCCATCGGAATCTGCCGTGCCGGAGAAGCCGAAGAGAAACAGATATGCTTTTTGCTTCCACGGCTTCTATCTTACTGGGTTACCGTAA 1137 47.67 MAMENMGNRTAISTAQFDRQTPPESAVPEKLKRNRYAFMCAVFASTASILLGYEKSVMDGGGTLMFIQEHFKLSDLRVEILLGVGNIYAAIGAAIAGRTSDYIGRRYTMVLVGFIFFFGAFLMGFATNFVSLMLGQFIIGLGTGYAFVVSPVYIAEVFINIGFVLGHLSNFLFSKLPIHLDWRFMVGIGQIGKAKWVLDKTSDSMEEAERRLADIKEANGIPAGYSLDEGLSRGYMAQKVFQQSYVPRDLSAGAMVNRAMAVVVIMTFWSLSNAITVGGVLFLYAGLATMSWVFFYILFPETQGKNLEDMDGLFVSNICPKEEKTSPAAAMAIENMGTRTAISGQFDREIPSESAVPEKPKRNRYAFCFHGFYLTGLP 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5930758 5939024 - CrPI670011_02g008920.1 Cre02g0892 490173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0892 378 SUPERFAMILY MFS general substrate transporter 23 189 IPR036259 -
Cre02g0892 378 ProSitePatterns Sugar transport proteins signature 1. 96 113 IPR005829 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cre02g0892 378 MobiDBLite consensus disorder prediction 1 26 - -
Cre02g0892 378 MobiDBLite consensus disorder prediction 7 21 - -
Cre02g0892 378 Gene3D MFS general substrate transporter like domains 225 317 IPR036259 -
Cre02g0892 378 SUPERFAMILY MFS general substrate transporter 236 311 IPR036259 -
Cre02g0892 378 Pfam Sugar (and other) transporter 238 314 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cre02g0892 378 Pfam Sugar (and other) transporter 41 157 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cre02g0892 378 ProSiteProfiles Major facilitator superfamily (MFS) profile. 40 378 IPR020846 GO:0022857(InterPro)
Cre02g0892 378 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 253 322 IPR050814 -
Cre02g0892 378 Gene3D MFS general substrate transporter like domains 35 220 IPR036259 -
Cre02g0892 378 Coils Coil 198 218 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0892 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0892 Cre-Chr2:5930758 Cre11g0941 Cre-Chr11:6702835 2.20E-58 dispersed
Cre02g0891 Cre-Chr2:5930342 Cre02g0892 Cre-Chr2:5930758 7.80E-19 tandem
Cre02g0892 Cre-Chr2:5930758 Cre02g0893 Cre-Chr2:5943974 2.00E-67 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g565 . . Bda06g00947 . . . . Bma12g00524 Cmo19g00663 Cmo11g01315 Cma02g00413 . Car02g00271 . . Cpe04g00244 Cpe15g00527 Bhi05g01211 Tan02g1972 . . . . . Cla02g00539 Cam02g0559 Cec02g0561 Cco02g0572 Clacu02g0560 Cmu02g0557 Cre02g0892 Cone12ag1139 Cone8ag1188 Cone3ag1149 Cone10ag1160 Lsi10g00350 . Chy11g00399 Cme01g01449 . . . Bda14g00542 Bpe15g00874 . . Bma08g00575 Sed14g1103 Cmo02g00417 . . Cma19g00653 Car11g01059 Car19g00496 . Cpe05g01246 Bhi10g02034 Tan05g1329 Cmetu01g1244 . Hepe08g1031 . . . . . . . . . Lsi11g01084 Csa02g01238 Chy01g00806 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015226 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 1 2 0 2 0 0 1 0 0 1 2 0 0 0 13