Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0906 ATGAAAATCCAAATGGGTGTTTACAGTTCTTCACAGGCCAGAAATGGAACCTTCTTTGGGACCCATCATATCCACATGCTGTGGATTGTGGACGATGCCATTGCTGCCAACGCCAAGCTGAGGAACTATTCTCTGCGGTCACCGGCTTTAACCACAGTGCCTTCCTCTTTATCTAGAACTGGGTTCTCAGACAAGCCATTGTTGAATGCTCAACCCCTGAAATTATCGAATAAGAAGACATACCCACTTGCAGGAAGGCTCAAATTTCTTCACATCAGAGCTCAAGCTTCTTCCAGCACAAGCAATTTTAGCTCAGAGGCAGCTCCAGCAATTTCAAAGAAGGAAGATTCGAAGGACAAGGATCTTGTATTTGTTGCTGGTGCTACTGGAAAAGTTGGTTCAAGAACAGTGAGGGAGCTTTTGAAACTTGGATTCCGTGTAAGAGCTGGTGTAAGGAGTTCTCAGAAAGCTGAAACTCTTGTTGAGAGTGTTAAAAAGCTTAAGCTTGATGAAGCTGTAGAAAAGCTTGAAACTGTGGTATGTGACTTGGAGAAACCAAACCAGATTGGACCTGCATTAGGGAATGCATCAATAGTTATTTGCTGCATTGGTGCAAGTGAGAAGGAGATTTTTGATATTACTGGACCTTACCGAATTGACTATCTGGCTACCAAAAATTTGGTTGAAGCAGCAACTGTGGCAAAAGCGAAGCACTTTGTTCTGCTTACGTCCCTGGGAACCAACAAGATCGGATTTCCTGCTGCCATTCTCAATTTGTTTTGGGGAGTCCTATTATGGAAAAGGAAGGCAGAAGAAGCATTGATTGCAAGTGGTCTTCCTTATACAATAGTCAGACCTGGAGGCATGGAGAGGCCTACAGATGCTTTCAAGGAAACTCATAATACTACTCTTTCACCAGAAGATACTTTATTTGGTGGTCTAGTGTCAAACCTTCAGGTTGCAGAGCTAATGGCATCCATAGCAAAAAATCCTGGCCTTTCATACTATAAAGTGCTAGAAGTAATTGCTGAGACAACTGCACCATTGACTCCCCTGGAGGATCTTCTTAAAAAAATACCATCTAAAGTTGCAAATGCTTTCCCAGAGAAGGAATATGGTGCTGTACGAACTGTTGATCCATCACCAAAACAGTCGAGCATTGCCAAAGAAAAGGAATCAGCTGAAGCAAATGTGACAGAACAGCCACCCCCTCAAAGTGTTTCATCAGAACAGTTGAGCATCGCAAAGGAGAAGGAATCAGCTGTAGCAAATGTTACAAAACAGTCATCATCACCCTACATTGCGTATGAGGATTTAAAACCTCCAACGTCTCCTACTCCAGCTGCACCTGTTGGGAAAATAGATTTAAATGTTGTTGAAGGAGTCTCATCTGGTGCTCAAACTATTTCAGCAGAGGCACCAACTGAAATTGCCGAGGCAAATCCCGCACCTGCACCTGCCCCTGAAAAAGCAGTGACATTGAAACCTCTCTCCCCTTATGTAGCATATGAAGATTTAAAGCCTCCTGCATCACCATCTCCTAGTGCACCTTCCCTATCATTTTCTTCAACATCTCCCTCAAATGGTCCACCTGAGCCTGCTACCTCAACCGTAAATAGCACATTGCCGATTCCAGAGGCAGAAGACTCAAAGAGTGAAGCACATCTTCCCAAGCCGAAGAAGCAACAACCGTTATCACCTTTTACCATATATGAAGATTTAAAGCCTCCTACATCACCATCTCCTAGTGCACCTTCCCTATCATTTTCTTCTTCATCTCCCTCAAACGGTCCACCTGAGCCCGCTACCTCCACCGTAAATAGCACATTGCCGATTCCAGAGGCAGAAGACTCAAAGAGTGAAGCACATCTTCCCAAGCCGAAGAAGCAACAACCGCTATCACCTTTTACCATCAAAATTGGTCATCTCTCCCAATGGACTGGCAGCCCATTAAACTTCACTGGAAGCCCCTTTGAACTGGTCTGCCATCCAACAACGAAAGGCCCAATTGAAGATCAGTGGTTTAGGGTTTGTCTATACCCATTTCCACTTAATTGCAATTTGCAATCGAAGACGGGAGTGGATATCCGACTTCAATTTTCAATTGAGAAAGTTCATATGGGTACGGACCAAAATCCCAAATCCGCTCAGAGTGAAAGCGTTGCTCCTGCAACTGCTTTGGCATACCTTGATCCTAAATACTGGGACGAGCGTTTTTCTAAGGAAGAGCATTATGAGTGGTTTAAGGATTATTCTCATTTTCGTCATCTCATACTTCCTCTTCTCAAACCCGATTCATCAGCATTGGAATTGGGTAGTGGAAATTCGAAACTTTCTGAGGAATTGTACAACGATGGAATCACCGATATAACATGCATTGATTTGTCTGCTGTGGCCGTTGAGAAGATGCAAAGACGTTTACATTTGAAGGGTATGAAAGAAATAAAGGTATTAGAAGCTGACATGCTAGACATGCCTTTTGGTGATGAGTGTTTTGATGTCGTTGTCGAGAAAGGAACCATGGATGTTCTGTTTGTGGACGGTGGCGACCCATGGAATCCTCAACCATCCACGCGAGCGAAGGTCATGGCAATGCTGGAAGGTGTCCATAGGGTTTTGAAGAAAGATGGCATTTTTGTCTCAATTACATTTGGCCAGCCGCATTTCAGGCGTCCCTTATTTAATGCTCCAGAGTTTACATGGTCATTTGAGTGCAATACTTTTGGCGATGGATTTCACTACTTCTTCTATACCTTGCGCAAGGGAAGGAGATCGTTTGGCGATAAAGGTGAAGGTGAGAGGTCTGATATGCCATCGATCTGTTTACTTCAAGACGAGCTAGAGGGTGAAGATTACATGTTCAGAACCAATGTTGATGAGCTGAATTGCTAG 2892 43.85 MKIQMGVYSSSQARNGTFFGTHHIHMLWIVDDAIAANAKLRNYSLRSPALTTVPSSLSRTGFSDKPLLNAQPLKLSNKKTYPLAGRLKFLHIRAQASSSTSNFSSEAAPAISKKEDSKDKDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLVESVKKLKLDEAVEKLETVVCDLEKPNQIGPALGNASIVICCIGASEKEIFDITGPYRIDYLATKNLVEAATVAKAKHFVLLTSLGTNKIGFPAAILNLFWGVLLWKRKAEEALIASGLPYTIVRPGGMERPTDAFKETHNTTLSPEDTLFGGLVSNLQVAELMASIAKNPGLSYYKVLEVIAETTAPLTPLEDLLKKIPSKVANAFPEKEYGAVRTVDPSPKQSSIAKEKESAEANVTEQPPPQSVSSEQLSIAKEKESAVANVTKQSSSPYIAYEDLKPPTSPTPAAPVGKIDLNVVEGVSSGAQTISAEAPTEIAEANPAPAPAPEKAVTLKPLSPYVAYEDLKPPASPSPSAPSLSFSSTSPSNGPPEPATSTVNSTLPIPEAEDSKSEAHLPKPKKQQPLSPFTIYEDLKPPTSPSPSAPSLSFSSSSPSNGPPEPATSTVNSTLPIPEAEDSKSEAHLPKPKKQQPLSPFTIKIGHLSQWTGSPLNFTGSPFELVCHPTTKGPIEDQWFRVCLYPFPLNCNLQSKTGVDIRLQFSIEKVHMGTDQNPKSAQSESVAPATALAYLDPKYWDERFSKEEHYEWFKDYSHFRHLILPLLKPDSSALELGSGNSKLSEELYNDGITDITCIDLSAVAVEKMQRRLHLKGMKEIKVLEADMLDMPFGDECFDVVVEKGTMDVLFVDGGDPWNPQPSTRAKVMAMLEGVHRVLKKDGIFVSITFGQPHFRRPLFNAPEFTWSFECNTFGDGFHYFFYTLRKGRRSFGDKGEGERSDMPSICLLQDELEGEDYMFRTNVDELNC 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6093830 6104764 - CrPI670011_02g009060.1 Cre02g0906 490187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0906 963 CDD AdoMet_MTases 769 884 - -
Cre02g0906 963 Pfam Methyltransferase domain 763 885 IPR025714 -
Cre02g0906 963 MobiDBLite consensus disorder prediction 516 546 - -
Cre02g0906 963 MobiDBLite consensus disorder prediction 584 614 - -
Cre02g0906 963 MobiDBLite consensus disorder prediction 503 633 - -
Cre02g0906 963 MobiDBLite consensus disorder prediction 398 415 - -
Cre02g0906 963 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 733 921 IPR029063 -
Cre02g0906 963 FunFam Protein TIC 62, chloroplastic 119 362 - -
Cre02g0906 963 Gene3D Vaccinia Virus protein VP39 727 932 IPR029063 -
Cre02g0906 963 CDD SDR_a5 123 345 - -
Cre02g0906 963 Pfam NAD(P)H-binding 127 331 IPR016040 -
Cre02g0906 963 Gene3D - 119 363 - -
Cre02g0906 963 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 44 638 IPR044719 -
Cre02g0906 963 MobiDBLite consensus disorder prediction 374 427 - -
Cre02g0906 963 FunFam EEF1A lysine methyltransferase 4 726 938 - -
Cre02g0906 963 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 122 341 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0906 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0906 Cre-Chr2:6093830 Cre04g0906 Cre-Chr4:27713154 6.10E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g545 . . . . . Bpe12g00072 . . Cmo19g00656 . . . . . Sed10g2078 . Cpe15g00519 Bhi05g01180 Tan02g0850 Cmetu01g2149 . Hepe02g0546 . . Cla02g00555 Cam02g0580 Cec02g0582 Cco02g0592 Clacu02g0580 Cmu02g0576 Cre02g0906 Cone12ag1129 . . . . Csa07g00828 . Cme01g00005 . Blo13g00558 Bda15g00020 . . . . . . . . . Cma19g00645 . . . . . . . . . . . . . . . . . . Lsi11g01056 . Chy01g00006 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002707 3 2 3 1 1 2 1 1 2 2 1 2 1 2 2 2 2 2 2 1 2 2 2 2 1 2 1 4 4 2 57