Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0921 ATGTGCCGGCGGGAAGGGTTTTTGTGGCAGTTCCGGCAGGTGTTGATCGTCTATTCGAATCGCTTCTCCGGAATTCGAGATACCGCTTTTGTGGAACTGGTTTACTCTTTTCTTCAGGATCTGATCGAGGAGGCTAAACTTCGAACGGTTTGGTGGGCTCTGTGTATTTTCGCGATTTCATACTTTTTGACCCATACTAGTAAGTCAATGTGGATGAATTTACCCCTAGCAATTCTATTAGTTTCTGCACTACGTATACTGTTCAATGAGGTAGAGTTCCGTAGAAAGGTCCGACCTATTCATCAACAGACATACTTATCTCACCTGGAGAAGAAGCAGTTATCTGTTAATGACTCGCGCCTGTCTTCAGCGCTTCCTCCACCAAGATGGAAAAGGAAAATTGATTCTCCTGCTGTGGAGGCTGCAATGAAGGATTTCATAGATAAAATATTGAAGGATTTTGTGGTTGACTTGTGGTATTCAGAAATAACCCCAGACAAGGAGTTTCCTGGGCAGATACATGCGCTGATCATGGACGCCCTTGGTGAGATAGCAGTTAGGGTGAAAGAGATAAACCTAGTTGACTTGCTCACGAGGGATGTTGTTGATCTAGTAGGTGACCACTTGGACCTTTTTAGAAGAAACCAAGCTGCCATCGGTGTTGATGTTATGGGAACGCTGTCTTCTGAGGAGAGAGATGAAAGGTTGAAACACCATCTTATGGCTTCGAAGGAGCTTCATCCAGCATTGGTGTCTCCTGAGAGTGAGTACAAGGTCCTTCAACGGCTCATGAGTGGAGTGTTGACTTCAGTACTGAGACCAAGAGAAACTCAATGTCCTGTTGTTCGATCCATTGCTCGAGAACTTTTAACATGCTTGGTGATGCAACCTCTTATGAATTTTGCAAGTCCTGGGTGCATAAATGAGTTGATCGAATGTATAGTCCTTGCCACTAGAGCTGAGAATGACTCGGTGATAGGCGGTCAACAACAAACTTATTCTTCAGAGCATGACAAAGACCATTCTTCTACTGCTGGATTCGTGCATGATGAAGATTTGAACAAAAGGAACTCATCTTTAAATCCAGGGAATGGTTCAGAGCTTGCTAAAGTTAACAATAAAAAAGAAATAAGCTCAGATTACATGTTCCAGGATGAGCCTTTGCATCTGAGACATGGTGATTGGGGCCGTGCATTGAATGCAGCAACCCAAAGGAGAACTGAAGTTCTAATGCCTGAAAATCTTGAAAACATGTGGACTAAAGGACGGAATTATAAGAAGAAAGAAAATAAGATCATTAAAATAGGAGATTCTGAGCCTATGGCTACAACAAAGAATTCTGGAACAGGTATCATGCAGCCTGCAACAACAACGAGGGAGGAAATGTTGACTGACAAGCATCATTCTTCTACTGGGCCAGAAGAAAAGGCAATAGTTAGGAGAACACCTGTAAGACATTCTGATCTCCTTATGACATCCAAACCAAGTGATGAGAACAAAATTGGTTTTCAGTCTTCTCTGGAACTTCAGAAGGATTCATCTATCGATGGGAAGTTTATTGCTAATGTATTAAAGGATGTTGATAATCTTACTCCTGCTAGTGCAACTAAAACTCCACTCAAGAGATCCAATAGTACTTCTGCTTTGAAAACTGAAGTTAGTGTAGAAAAGACTTCTACAGAAGGTGGAAGATCAATTATATCAGATTTCTATGGTCCCAATTTTGGCAAGCATGGTGAAGAGCCCCTTTCTAAGAGTGCCTCGGATATGGTGATCCAAAAAGAAGGACTACTTGTCCCCAAACTTAGGAGTCGGGTAATGGGTGCATACTTTGAGAAGCTTGGTTCAAAATCTTTTGCTGTGTATTCAATAGCTGTTACAGATGCAAATAACAGAACTTGGTTTGTCAAGAGAAGGTACCGAAATTTTGAGCGCCTACATCGGCATCTTAAAGATATTCCTAACTATACACTGCACCTGCCTCCCAAACGAATATTTTCATCAAGCACAGAAGATGCTTTTGTTCACCAACGTTGCATTCAACTTGACAAATATTTGCAGGAGCTATTATCAATTGCAAATGTTGCTGAGCAGCATGAAGTATGGGATTTTTTAAGTGTTTCCTCAAAGAACTATTCGTTTGGAAAATCTTCCTCAGTGATGAGAACATTAGCAGTCAATGTGGATGATGCCGTGGATGACATTGTACGTCAGTTTAAAGGGGTTTCAGATGGTTTCATGCGTAAAGTTGTTGGTTCAACCTCACCTGATGAAGCTTGTGCCTCATCAAATTATGACCGGAAGTTTTCATTTAATTCAGCAGACTTAAGCAGACATGTTTCTGCACAATATAATTTAGAGATAGCTAATAACATTTCTGACGAGGAAGGTGAGCGAATTGAAAGTCAAAATCGTGAAAAGGTTAGTGGATGGCATTCAGACAATGAATTAAACTCTAAGAGCTTTCCCCCTCGTGTGATCAAACGTGGTGAAGAGTCAGATAAATTAGTTGTCGACAAGAAGAATGATCTAGAATTGAGGTCTGGGGCCAGCCATGGAGGATTTTCACAAACTTCGTATCATATGGAAGATCCAGAAGGAATGCCACCAGAGTGGACTCCACCTAATGTCAGCGTACCTCTTCTAAATCTGGTTGACAAGATATTTCAGCTTAACAGGAGAGGCTGGATAAGGAGGCAGGTCCTTTGGATATCAAAACAAATATTACAGTTAATTATGGAAGATGCTATTGACGACTGGATTGTCAGGCAAATACACTGGCTACGGAGGGAGGACATCATTGCTCAGGGTATTCGATGGGTCCAAGATGTTCTCTGGCCCAATGGAATATTCTTCATACAATTGAGGAATGCTCAAAGTGAAGATGATGATTCTCAATCTACTACTAGCCGAGCTGATGGAAGCAAGATCCCCAAGCCTGGATCTTTTGAGCTGCAGCTCGAGGCTGCTCGCAGAGCTAGCGATGTCAAGAAAATGCTTTTTGCTGGGGCTCCAACACCATTGGTAAGCTTGATAGGGCACAAGCAATACAAAAGATGTGCAAAAGATATTTACTACTTCACTCAGTCTACCATCTGTGTGAAGCAACTTGGGTATGGATTACTCGAACTATTACTCGTATCACTTTTCCCCGAGCTACGGAATTTAGTTTTGGAGATTCATGACAAGTCGCACGTCTCGCAACCAGTTTAG 3213 41.92 MCRREGFLWQFRQVLIVYSNRFSGIRDTAFVELVYSFLQDLIEEAKLRTVWWALCIFAISYFLTHTSKSMWMNLPLAILLVSALRILFNEVEFRRKVRPIHQQTYLSHLEKKQLSVNDSRLSSALPPPRWKRKIDSPAVEAAMKDFIDKILKDFVVDLWYSEITPDKEFPGQIHALIMDALGEIAVRVKEINLVDLLTRDVVDLVGDHLDLFRRNQAAIGVDVMGTLSSEERDERLKHHLMASKELHPALVSPESEYKVLQRLMSGVLTSVLRPRETQCPVVRSIARELLTCLVMQPLMNFASPGCINELIECIVLATRAENDSVIGGQQQTYSSEHDKDHSSTAGFVHDEDLNKRNSSLNPGNGSELAKVNNKKEISSDYMFQDEPLHLRHGDWGRALNAATQRRTEVLMPENLENMWTKGRNYKKKENKIIKIGDSEPMATTKNSGTGIMQPATTTREEMLTDKHHSSTGPEEKAIVRRTPVRHSDLLMTSKPSDENKIGFQSSLELQKDSSIDGKFIANVLKDVDNLTPASATKTPLKRSNSTSALKTEVSVEKTSTEGGRSIISDFYGPNFGKHGEEPLSKSASDMVIQKEGLLVPKLRSRVMGAYFEKLGSKSFAVYSIAVTDANNRTWFVKRRYRNFERLHRHLKDIPNYTLHLPPKRIFSSSTEDAFVHQRCIQLDKYLQELLSIANVAEQHEVWDFLSVSSKNYSFGKSSSVMRTLAVNVDDAVDDIVRQFKGVSDGFMRKVVGSTSPDEACASSNYDRKFSFNSADLSRHVSAQYNLEIANNISDEEGERIESQNREKVSGWHSDNELNSKSFPPRVIKRGEESDKLVVDKKNDLELRSGASHGGFSQTSYHMEDPEGMPPEWTPPNVSVPLLNLVDKIFQLNRRGWIRRQVLWISKQILQLIMEDAIDDWIVRQIHWLRREDIIAQGIRWVQDVLWPNGIFFIQLRNAQSEDDDSQSTTSRADGSKIPKPGSFELQLEAARRASDVKKMLFAGAPTPLVSLIGHKQYKRCAKDIYYFTQSTICVKQLGYGLLELLLVSLFPELRNLVLEIHDKSHVSQPV 1070
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6296864 6307478 - CrPI670011_02g009210.1 Cre02g0921 490202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0921 1070 Gene3D - 603 717 IPR036871 GO:0035091(InterPro)
Cre02g0921 1070 MobiDBLite consensus disorder prediction 848 867 - -
Cre02g0921 1070 SMART PXA_3 136 319 IPR003114 -
Cre02g0921 1070 SMART PX_2 600 708 IPR001683 GO:0035091(InterPro)
Cre02g0921 1070 MobiDBLite consensus disorder prediction 334 356 - -
Cre02g0921 1070 Pfam Sorting nexin C terminal 896 1030 IPR013937 -
Cre02g0921 1070 Pfam PXA domain 136 313 IPR003114 -
Cre02g0921 1070 PANTHER PX SERINE/THREONINE KINASE PXK 38 1065 IPR051837 -
Cre02g0921 1070 SUPERFAMILY PX domain 608 711 IPR036871 GO:0035091(InterPro)
Cre02g0921 1070 MobiDBLite consensus disorder prediction 329 368 - -
Cre02g0921 1070 MobiDBLite consensus disorder prediction 533 555 - -
Cre02g0921 1070 Pfam PX domain 630 707 IPR001683 GO:0035091(InterPro)
Cre02g0921 1070 ProSiteProfiles PX domain profile. 600 712 IPR001683 GO:0035091(InterPro)
Cre02g0921 1070 ProSiteProfiles PXA domain profile. 136 319 IPR003114 -
Cre02g0921 1070 CDD PX_SNX19_like_plant 602 706 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0921 K17925 - - csv:101222929 1869.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0921 Cre-Chr2:6296864 Cre09g0192 Cre-Chr9:2100817 6.30E-135 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g500 . . . . . Bpe12g00069 . . Cmo19g00647 Cmo11g01333 . . . . . Cpe04g00257 Cpe15g00511 Bhi05g01163 . . . Hepe02g0556 . . Cla02g00568 Cam02g0598 Cec02g0598 Cco02g0609 Clacu02g0594 Cmu02g0592 Cre02g0921 Cone12ag1120 Cone8ag1165 . . . Csa07g00810 . Cme01g00015 . . Bda15g00024 . . . . . . . . Cma11g01777 Cma19g00630 Car11g01074 Car19g00481 . . . . . . . . . . . . . . . . Lsi11g01041 . Chy01g00019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009346 0 3 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34