Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0946 GGTAAATGGATATATGATATGGATCCATTTGAACCATTGAAGTATGAAGAACCACTGAAGGCCTTGAAAGCCAGAATAGCTGCAGAAGGACCCAAAGCTGTCTTTTCTCCTTTGATAGAGAAATTCATCTTGAACAACCCTCATCGTGTAACTATCGAGATGCAGCCTGATCCAGAGAAAGCTTCTCGTGATGAAGCAGCTGAAAAAGAAATCTTGCAGAAAGTTAGAGAAAGCATGACTGAAGAAGATCTTGCTGAATTAGCACGTGCTACACAGGAGTTACGGCTGAAACAGGAAACACCTGATCCACCAGAAGCTTTAAAATGTGTTCCAAGCCTTTGCCTTGAAGATATTCCTAAAGAACCTATTCGTGTTCCAACAGAAATCGGGAATGTTAATGGAGTAACCGTCTTACAACATGAACTCTTCACAAATGATGTTCTTTATTCCGAAGTTGTTTTCGACATGAGTTCACTGAAGCAGGAGCTTCTTCCCTTGGTACCTTTATTTTGTCAATCATTGTTAGAGATGGGCACAAAAGACTTGACTTTTGTGCAACTTAATCAATTAATTGGAAGGAAGACTGGTGGGATATCAGTCTATCCATTTACGTCATCTATACGTGGCAATGACAACGCATGTACTCATATGATTGTGAGAGGCAAGGCTATGTCAGGATGTGCTGAAGACTTGTTCAACCTGATGAACTGCATTCTTCAAGAAGTACAGTTTACTGATCAGCAGCGTTTTAAACAGTTTGTATCTCAGAGCAAATCACGAATGGAGAATCGGTTAAGGGGTAGTGGTCATGGAATTGCTGCTGCTAGGATGGATGCAAAGTTGAACAGTGCAGGGTGGATCTCTGAACAAATGGGTGGTCTCAGTTATCTGGAATTCCTGCAAACTCTTGAAGAGAAAGTTGATCAAAACTGGGTTGAAATTTCTTCATCACTTGAGGAAATCCGCCAATCCTTACTTTCAAGGAAGAATTGCCTAGTCAACGTTACTGCTGATGGCAAAAATCTCATAAAGTCAGAGAAGTTCATCGGCAAATTTCTTGATTTGCTTCCTAATCAACCTGTCATTAAGAACAGCACTTGGAATGCCCGGCTTTCTTCAGATAATGAAGCCATCGTGATACCTACTCAGGTTAATTACGTTGGAAAAGCAGCTAACATTTATGAAACTGGCTATCAACTTGATGGAAGTGCCTATGTTATTTCAAAGTTCATTAGTAATACTTGGCTGTGGGATCGTGTTAGAGTAAGTGGAGGTGCTTATGGAGGGTTTTGTGATTTTGATACTCATTCAGGAGTATTCTCCTTTCTATCTTATCGTGACCCAAATTTGTTAAAGACACTTGATGTATATGATGGAACCGTTGATTTTCTACGTGAATTGGATTTGGATGACGATACTCTAGCAAAAGCCATAATTGGAACCATTGGAGATGTTGATTCATACCAGCTTCCTGATGCTAAAGGTTATAGTAGCTTGTTGCGGTATTTATTAGGAATTACAGAAGAAGAAAGGCAAAGGAGAAGGGAAGAGATTTTATCAACCAGCTTGAAGGACTTCAAGAACTTCGCCGACGCACTCGAGGCAGTTAGAAACAAAGGAGTGGTAGTTTCAGTTGCATCTCCCGAAGACGTCGAAACTGCACACAGCGAACGCCCAGAAGTTGGAGGATTCGTATTTGTAAAAGCTGCCCAAAATCTTCGCAACGACTTCGTTAGAAGCAATCAACAAAGTAAAAATGCCGCTTCGGAGATTGACGAATCTCAGCCGTTGAAACAAGATCGCCGAAATGGTTTTGGAGCGGCCATGAAAGCAGAGTTCAAGCTGGAGGTAGAGACGGCGATGGGCGATTGCAAGCGCGTTGTGGTGATGACGGCGGCGAATAATGCAGGTTGCATGTCTAAGAGAAGGAGAATTGCCGGTTCGTCGGAGAGTTTGCGGCCGTCGACGTCTCGGTCTGACCTCCACGACCGTTGTTTGTGGTTGGAGAATGCGACGACGTCTCTGTCGCGTTTGGAGAAGAAGAATTCCCTTGGCATTGTTGCTGGAGGTGAGATGAGTGATGGTTTTTCAGAGGATCAGTTTCCGGTTTCTTGTAGCTTCAGTAACGACTGCGGGAAGGCAACCGCCGTGAAATTTGAAGATCTGGAGCTGCAGACCAAGAGCTTCGAAACCGTAGAGTCGATTCGTGTTAACGGCATTCAAAGAGAGAGCACTCCAACGAGCAATCTCCTGGGAGATTCCGACGAAATGGACTCTCCGGCAACGAACTTCTTGACTGAAAAACAAAAGCCAACGGATCGTCCGATGAAGACACCACCGATCTCTGAGATTGAAGATTTCTTCGCCGAGGCTGAGAAGTACGAACAGAAGCGTTTCTCAGAAAAGTACAATTTCGATATAGTGATGGATGTACCAGTAAAAACAGGATATGATTCTCTTAGCTTAAGCTACCTTGGAGGAGAAAATGATGATGAAGAACAAAGAAGCAAGAAGAAGAAGAAGAAGGAGAAGAAGCAATTCTATGGGGACCATCCAGAGGGTTAA 2565 43.12 GKWIYDMDPFEPLKYEEPLKALKARIAAEGPKAVFSPLIEKFILNNPHRVTIEMQPDPEKASRDEAAEKEILQKVRESMTEEDLAELARATQELRLKQETPDPPEALKCVPSLCLEDIPKEPIRVPTEIGNVNGVTVLQHELFTNDVLYSEVVFDMSSLKQELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPFTSSIRGNDNACTHMIVRGKAMSGCAEDLFNLMNCILQEVQFTDQQRFKQFVSQSKSRMENRLRGSGHGIAAARMDAKLNSAGWISEQMGGLSYLEFLQTLEEKVDQNWVEISSSLEEIRQSLLSRKNCLVNVTADGKNLIKSEKFIGKFLDLLPNQPVIKNSTWNARLSSDNEAIVIPTQVNYVGKAANIYETGYQLDGSAYVISKFISNTWLWDRVRVSGGAYGGFCDFDTHSGVFSFLSYRDPNLLKTLDVYDGTVDFLRELDLDDDTLAKAIIGTIGDVDSYQLPDAKGYSSLLRYLLGITEEERQRRREEILSTSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPEVGGFVFVKAAQNLRNDFVRSNQQSKNAASEIDESQPLKQDRRNGFGAAMKAEFKLEVETAMGDCKRVVVMTAANNAGCMSKRRRIAGSSESLRPSTSRSDLHDRCLWLENATTSLSRLEKKNSLGIVAGGEMSDGFSEDQFPVSCSFSNDCGKATAVKFEDLELQTKSFETVESIRVNGIQRESTPTSNLLGDSDEMDSPATNFLTEKQKPTDRPMKTPPISEIEDFFAEAEKYEQKRFSEKYNFDIVMDVPVKTGYDSLSLSYLGGENDDEEQRSKKKKKKEKKQFYGDHPEG 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6660035 6677099 + CrPI670011_02g009460.1 Cre02g0946 490227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0946 854 Pfam PreP C-terminal domain 375 547 - -
Cre02g0946 854 Gene3D - 121 370 - -
Cre02g0946 854 Gene3D - 86 540 - -
Cre02g0946 854 FunFam Presequence protease 1 359 540 - -
Cre02g0946 854 SUPERFAMILY LuxS/MPP-like metallohydrolase 113 367 IPR011249 GO:0046872(InterPro)
Cre02g0946 854 PANTHER PRESEQUENCE PROTEASE 2 579 - GO:0004222(PANTHER)|GO:0005739(PANTHER)|GO:0009507(PANTHER)|GO:0016485(PANTHER)
Cre02g0946 854 SUPERFAMILY LuxS/MPP-like metallohydrolase 371 548 IPR011249 GO:0046872(InterPro)
Cre02g0946 854 SMART M16C_assoc_2 54 303 IPR013578 GO:0006508(InterPro)
Cre02g0946 854 MobiDBLite consensus disorder prediction 581 601 - -
Cre02g0946 854 Pfam Peptidase M16C associated 54 303 IPR013578 GO:0006508(InterPro)
Cre02g0946 854 SUPERFAMILY LuxS/MPP-like metallohydrolase 2 111 IPR011249 GO:0046872(InterPro)
Cre02g0946 854 MobiDBLite consensus disorder prediction 819 854 - -
Cre02g0946 854 Gene3D - 1 76 - -
Cre02g0946 854 Pfam Cyclin-dependent kinase inhibitor 782 817 IPR003175 GO:0004861(InterPro)|GO:0005634(InterPro)|GO:0051726(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0946 K06972 - - csv:101206839 1087.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0946 Cre-Chr2:6660035 Cre02g1591 Cre-Chr2:28594381 4.20E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g435 . . . . . . Bma05g00520 . Cmo19g00630 Cmo11g01354 . . . . Sed10g2039 Cpe04g00273 Cpe15g00495 Bhi05g01129 Tan02g0899 Cmetu01g0736 . Hepe02g0578 . . Cla02g00593 Cam02g0622 Cec02g0621 Cco02g0637 Clacu02g0626 Cmu02g0622 Cre02g0946 . . . . Lsi10g00565 Csa07g00769 . Cme01g00040 . . . . . . . . . Cmo02g00567 . Cma11g01758 Cma19g00611 . Car19g00464 . . . . . . . . . . . . . . . . . . Chy01g00046 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008932 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34