Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre02g0947 | ATGGTGCTCACTACACAAGCTCCAATACTTGAGTCAAGGACCCCGTTTGAATTCAAATCAAACTACGGAGCTCTTTTTATTGGCGCTCGAAATTCTCTCTCAAGAGCCCATCACTGGAAAATCGAAGGGAACGAGCTTCAGTTCAGCGACGGAATCCTACAACAGAAAATGGTGGAATCGAACCTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTTAATCTGAACAAACTTGCCGATGCTCTGAAATTTTCCAGCCCTAAATCCTGTCCGACCAAACAGCTAAAGCGTCCTCGTCAGCCACTCGATAAGTCGTCTTTCAGTGTGAGAAGGTCTAGCCGGTTTGCCGATAAGCCCCCTCCGAACTATAAGGAGGTGCCCATTGAACCACTTTCAGGTATAAGAAGGACTTATCAAAGGAGAGATTTGCTGAATCGGATTTATGCTTCACATGAAGAAAGGCAATATGCTATTGACAGAGCAAGAGACCTTCAATCTAGCCTGGAATCTAGGTACCCCAGTTTTGTGAAGCCCATGCTTCAATCACATGTCACAGGGGGATTTTGGCTGGGTCTACCAGTTCAATTTTGCAAGACACACCTTCCCCTTGAGGATGAAATGCTAACTCTGGTTGACGAGGATGATAATGAGTTCCAAACGAAATACCTTGCCGATAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTTCCATTGATCATCAGTTAGTAGATGGGGATGCTTTGGTGTTTCAGTTAACTAAGCCAACTGAATTCAAGGTATATATCATCAGAGCATACAATTTAGAAGACAGAGAAGATACCAATGAGGATTCTGATGTCACCCAATTGGAAAAAAGTGGCAAAAGAAATACCAAATCATCAGGGCATAAATCCAGGGCAAATAATTCTGAGGATAAAGGAGATAACGGTGAGGATTCAGCAGATGTCTCTCAGTTGGAAAAAAGTGGCAAAAAAACTACTAAATCATCAGGGCGTAAAAGCAGGGCAAATAAATCCAAAGATAAAGCAGATAACGGCGCGGATTTGGATGTCCCCGAGCTGGAAAAAAGTGGCAAAAGAATTACTAGATCATCAAGTAAAGGGAAAAAGTTAGCCAAACAAAAAGGGTTTAGGCATTTTCCGATCAGAAATGGCGTCTCTCATGGCGGTCCGGCGTGCTCGAACCCCCATTCTTATCTCCTCCTTCTTCAAGATACCCTAATCAAAGCCCTAAGCACCTCGGCAATCCGTAACGATTTCTCAAATTTTCCTCCTCCGCCGCAACAACCTTCTTCATCTGACCCTCGACATCGTCAAGCCCAGTGGGGCTCGCCGAGCCAGGGAAGCCCTAGTAATCAATTGAAGTATCGGAGTCAGAATCAGAGCCCTCAACCCAATCCTGGATTTTCCCTGCAGGGTCAGAGCTATACTCAACCCGGTAACCCTAATTCGTGGAATCCTCCAAATCAAAGCTACCCGCAGTATCAAAATCCTTCGCAGGCGAACCCTCAAAATTTCAATTATCAGCAACAAAGAGGCCCTAACCAATGGAACAATCAAAAACAGGGATATCCACAATTTGGAAGGCCTGAACAGCGTAACCCACAAGTAGAGAATTCTAATCAGTTGAATAATCAGGCCGGGATTCAAAGGCAAGGTGCTCAAAATCAAGCACCAAATGCCCTTGTATCTCCTATTGATGAACTGCGGCGCCTTTGTGGAGAGGGGAAGATGAAAGAAGCTGTTGAATTATTGAAAGAAGGTGTTAAAGCTGATGCTGATTGTTTCCATTTGTTGTTTGAACTATGTGGGAAATCCAAGTCATTTGACAATGCTAAAGTAGTTCATGATTACTTTTTACAGTCAACTTGTAGAAGTGATCTGCAATTGAATAATAAAGTGCTTGAGATGTATGGGAGATGTGGAAGCATGAGTGATGCACGGAGAGTGTTCGACTATATGCCTGATAGAAATATTGATTCTTGGCATTTTATGATGAAAGGATATGCTGATAATGGATTGGGTGATGAGGGTCTGGAGTTATTTGAGAATATGAAGCAGCTAGGGTTGCAACCCGATTCACAAACTTTCCTTTTTGTTATGTCAGCTTGTGCTAGTGCGAATGCTGTGGAAGAAGGATTTCTGTACTTTGAGTCAATGAAAAATGATTATCATATTACCCCAGACATGGATCATTATTTGGGGCTTTTAGGTATTCTTGGAGAACCAGGACACATTAATGAGGCTTTCGAGTATGTTAAGAAACTGCCAATGGAGCCCACAGTTGAGGTATGGGAGACTTTAAAGAACTATGCTAGAATTCATGGAGATGTTGATCTTGAGGACTATGCAGAGGAGCTAATTGTTGATCTGGACCCGACGAAAGCTGTCTCTAATAAGATATCGACGCCACCTCCCAAAAAACGGTCTGCAATTAGCATGCTTGATGGGAAGAACAGGATTAGTGAATTCAGAAATCCAACTCTCTACAAAGATGATGAAAAATTAAAGGCTTTGAAGGCAATGAAAGAACAAGGGTATGTGCCAGATACTAGATATGTTCTTCACGATATCGATCAAGAGGCCAAAGAGCAGGCATTGCTGTATCATAGTGAACGATTGGCAATTGCATATGGATTGATCAGTACTCCGGCACGAACGCCTCTTAGGATCATTAAGAACCTAAGGATCTGCGGTGATTGTCATAATGCCATCAAAATCATGTCTAGAATTGTTGGGAGAGAGTTAATTGTAAGGGACAACAAACGGTTCCATCATTTTAAGGATGGTAAATGTTCTTGTGGGGATTACTGGTAA | 2844 | 42.9 | MVLTTQAPILESRTPFEFKSNYGALFIGARNSLSRAHHWKIEGNELQFSDGILQQKMVESNLTYEECRRQRLEENKKRMEELNLNKLADALKFSSPKSCPTKQLKRPRQPLDKSSFSVRRSSRFADKPPPNYKEVPIEPLSGIRRTYQRRDLLNRIYASHEERQYAIDRARDLQSSLESRYPSFVKPMLQSHVTGGFWLGLPVQFCKTHLPLEDEMLTLVDEDDNEFQTKYLADKTGLSGGWRGFSIDHQLVDGDALVFQLTKPTEFKVYIIRAYNLEDREDTNEDSDVTQLEKSGKRNTKSSGHKSRANNSEDKGDNGEDSADVSQLEKSGKKTTKSSGRKSRANKSKDKADNGADLDVPELEKSGKRITRSSSKGKKLAKQKGFRHFPIRNGVSHGGPACSNPHSYLLLLQDTLIKALSTSAIRNDFSNFPPPPQQPSSSDPRHRQAQWGSPSQGSPSNQLKYRSQNQSPQPNPGFSLQGQSYTQPGNPNSWNPPNQSYPQYQNPSQANPQNFNYQQQRGPNQWNNQKQGYPQFGRPEQRNPQVENSNQLNNQAGIQRQGAQNQAPNALVSPIDELRRLCGEGKMKEAVELLKEGVKADADCFHLLFELCGKSKSFDNAKVVHDYFLQSTCRSDLQLNNKVLEMYGRCGSMSDARRVFDYMPDRNIDSWHFMMKGYADNGLGDEGLELFENMKQLGLQPDSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILGEPGHINEAFEYVKKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNKISTPPPKKRSAISMLDGKNRISEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW | 947 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 6687545 | 6696392 | + | CrPI670011_02g009470.1 | Cre02g0947 | 490228 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre02g0947 | 947 | Gene3D | Tetratricopeptide repeat domain | 576 | 732 | IPR011990 | GO:0005515(InterPro) | |
Cre02g0947 | 947 | SMART | B3_2 | 184 | 275 | IPR003340 | GO:0003677(InterPro) | |
Cre02g0947 | 947 | MobiDBLite | consensus disorder prediction | 427 | 548 | - | - | |
Cre02g0947 | 947 | Pfam | DYW family of nucleic acid deaminases | 855 | 947 | IPR032867 | GO:0008270(InterPro) | |
Cre02g0947 | 947 | MobiDBLite | consensus disorder prediction | 94 | 137 | - | - | |
Cre02g0947 | 947 | Pfam | B3 DNA binding domain | 184 | 273 | IPR003340 | GO:0003677(InterPro) | |
Cre02g0947 | 947 | MobiDBLite | consensus disorder prediction | 343 | 371 | - | - | |
Cre02g0947 | 947 | PANTHER | OS07G0578800 PROTEIN-RELATED | 579 | 806 | IPR045215 | GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER) | |
Cre02g0947 | 947 | MobiDBLite | consensus disorder prediction | 372 | 386 | - | - | |
Cre02g0947 | 947 | SUPERFAMILY | DNA-binding pseudobarrel domain | 177 | 274 | IPR015300 | - | |
Cre02g0947 | 947 | MobiDBLite | consensus disorder prediction | 442 | 548 | - | - | |
Cre02g0947 | 947 | FunFam | Pentatricopeptide repeat-containing protein, mitochondrial | 576 | 724 | - | - | |
Cre02g0947 | 947 | Coils | Coil | 62 | 89 | - | - | |
Cre02g0947 | 947 | NCBIfam | pentatricopeptide repeat | 670 | 703 | IPR002885 | - | |
Cre02g0947 | 947 | ProSiteProfiles | B3 DNA-binding domain profile. | 184 | 275 | IPR003340 | GO:0003677(InterPro) | |
Cre02g0947 | 947 | CDD | B3_DNA | 182 | 273 | IPR003340 | GO:0003677(InterPro) | |
Cre02g0947 | 947 | Pfam | PPR repeat family | 667 | 714 | IPR002885 | - | |
Cre02g0947 | 947 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 667 | 701 | IPR002885 | - | |
Cre02g0947 | 947 | Gene3D | - | 159 | 276 | IPR015300 | - | |
Cre02g0947 | 947 | MobiDBLite | consensus disorder prediction | 281 | 392 | - | - | |
Cre02g0947 | 947 | MobiDBLite | consensus disorder prediction | 307 | 336 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g0947 | Cre-Chr2:6687545 | Cre04g2104 | Cre-Chr4:38242463 | 4.40E-71 | dispersed | |
Cre08g1520 | Cre-Chr8:27891817 | Cre02g0947 | Cre-Chr2:6687545 | 1.10E-63 | dispersed | |
Cre03g1354 | Cre-Chr3:24374156 | Cre02g0947 | Cre-Chr2:6687545 | 1.40E-69 | transposed | |
Cre07g1737 | Cre-Chr7:32831837 | Cre02g0947 | Cre-Chr2:6687545 | 1.40E-123 | transposed | |
Cre01g0640 | Cre-Chr1:5818761 | Cre02g0947 | Cre-Chr2:6687545 | 2.20E-70 | wgd | |
Cre02g0947 | Cre-Chr2:6687545 | Cre05g1174 | Cre-Chr5:11310470 | 4.20E-33 | wgd | |
Cre02g0947 | Cre-Chr2:6687545 | Cre08g1519 | Cre-Chr8:27886123 | 6.00E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53120 | PF14432 | DYW_deaminase | 6.70E-33 | CL0109 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre02g0947 | - | - | - | 0.0 |