Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0947 ATGGTGCTCACTACACAAGCTCCAATACTTGAGTCAAGGACCCCGTTTGAATTCAAATCAAACTACGGAGCTCTTTTTATTGGCGCTCGAAATTCTCTCTCAAGAGCCCATCACTGGAAAATCGAAGGGAACGAGCTTCAGTTCAGCGACGGAATCCTACAACAGAAAATGGTGGAATCGAACCTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTTAATCTGAACAAACTTGCCGATGCTCTGAAATTTTCCAGCCCTAAATCCTGTCCGACCAAACAGCTAAAGCGTCCTCGTCAGCCACTCGATAAGTCGTCTTTCAGTGTGAGAAGGTCTAGCCGGTTTGCCGATAAGCCCCCTCCGAACTATAAGGAGGTGCCCATTGAACCACTTTCAGGTATAAGAAGGACTTATCAAAGGAGAGATTTGCTGAATCGGATTTATGCTTCACATGAAGAAAGGCAATATGCTATTGACAGAGCAAGAGACCTTCAATCTAGCCTGGAATCTAGGTACCCCAGTTTTGTGAAGCCCATGCTTCAATCACATGTCACAGGGGGATTTTGGCTGGGTCTACCAGTTCAATTTTGCAAGACACACCTTCCCCTTGAGGATGAAATGCTAACTCTGGTTGACGAGGATGATAATGAGTTCCAAACGAAATACCTTGCCGATAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTTCCATTGATCATCAGTTAGTAGATGGGGATGCTTTGGTGTTTCAGTTAACTAAGCCAACTGAATTCAAGGTATATATCATCAGAGCATACAATTTAGAAGACAGAGAAGATACCAATGAGGATTCTGATGTCACCCAATTGGAAAAAAGTGGCAAAAGAAATACCAAATCATCAGGGCATAAATCCAGGGCAAATAATTCTGAGGATAAAGGAGATAACGGTGAGGATTCAGCAGATGTCTCTCAGTTGGAAAAAAGTGGCAAAAAAACTACTAAATCATCAGGGCGTAAAAGCAGGGCAAATAAATCCAAAGATAAAGCAGATAACGGCGCGGATTTGGATGTCCCCGAGCTGGAAAAAAGTGGCAAAAGAATTACTAGATCATCAAGTAAAGGGAAAAAGTTAGCCAAACAAAAAGGGTTTAGGCATTTTCCGATCAGAAATGGCGTCTCTCATGGCGGTCCGGCGTGCTCGAACCCCCATTCTTATCTCCTCCTTCTTCAAGATACCCTAATCAAAGCCCTAAGCACCTCGGCAATCCGTAACGATTTCTCAAATTTTCCTCCTCCGCCGCAACAACCTTCTTCATCTGACCCTCGACATCGTCAAGCCCAGTGGGGCTCGCCGAGCCAGGGAAGCCCTAGTAATCAATTGAAGTATCGGAGTCAGAATCAGAGCCCTCAACCCAATCCTGGATTTTCCCTGCAGGGTCAGAGCTATACTCAACCCGGTAACCCTAATTCGTGGAATCCTCCAAATCAAAGCTACCCGCAGTATCAAAATCCTTCGCAGGCGAACCCTCAAAATTTCAATTATCAGCAACAAAGAGGCCCTAACCAATGGAACAATCAAAAACAGGGATATCCACAATTTGGAAGGCCTGAACAGCGTAACCCACAAGTAGAGAATTCTAATCAGTTGAATAATCAGGCCGGGATTCAAAGGCAAGGTGCTCAAAATCAAGCACCAAATGCCCTTGTATCTCCTATTGATGAACTGCGGCGCCTTTGTGGAGAGGGGAAGATGAAAGAAGCTGTTGAATTATTGAAAGAAGGTGTTAAAGCTGATGCTGATTGTTTCCATTTGTTGTTTGAACTATGTGGGAAATCCAAGTCATTTGACAATGCTAAAGTAGTTCATGATTACTTTTTACAGTCAACTTGTAGAAGTGATCTGCAATTGAATAATAAAGTGCTTGAGATGTATGGGAGATGTGGAAGCATGAGTGATGCACGGAGAGTGTTCGACTATATGCCTGATAGAAATATTGATTCTTGGCATTTTATGATGAAAGGATATGCTGATAATGGATTGGGTGATGAGGGTCTGGAGTTATTTGAGAATATGAAGCAGCTAGGGTTGCAACCCGATTCACAAACTTTCCTTTTTGTTATGTCAGCTTGTGCTAGTGCGAATGCTGTGGAAGAAGGATTTCTGTACTTTGAGTCAATGAAAAATGATTATCATATTACCCCAGACATGGATCATTATTTGGGGCTTTTAGGTATTCTTGGAGAACCAGGACACATTAATGAGGCTTTCGAGTATGTTAAGAAACTGCCAATGGAGCCCACAGTTGAGGTATGGGAGACTTTAAAGAACTATGCTAGAATTCATGGAGATGTTGATCTTGAGGACTATGCAGAGGAGCTAATTGTTGATCTGGACCCGACGAAAGCTGTCTCTAATAAGATATCGACGCCACCTCCCAAAAAACGGTCTGCAATTAGCATGCTTGATGGGAAGAACAGGATTAGTGAATTCAGAAATCCAACTCTCTACAAAGATGATGAAAAATTAAAGGCTTTGAAGGCAATGAAAGAACAAGGGTATGTGCCAGATACTAGATATGTTCTTCACGATATCGATCAAGAGGCCAAAGAGCAGGCATTGCTGTATCATAGTGAACGATTGGCAATTGCATATGGATTGATCAGTACTCCGGCACGAACGCCTCTTAGGATCATTAAGAACCTAAGGATCTGCGGTGATTGTCATAATGCCATCAAAATCATGTCTAGAATTGTTGGGAGAGAGTTAATTGTAAGGGACAACAAACGGTTCCATCATTTTAAGGATGGTAAATGTTCTTGTGGGGATTACTGGTAA 2844 42.9 MVLTTQAPILESRTPFEFKSNYGALFIGARNSLSRAHHWKIEGNELQFSDGILQQKMVESNLTYEECRRQRLEENKKRMEELNLNKLADALKFSSPKSCPTKQLKRPRQPLDKSSFSVRRSSRFADKPPPNYKEVPIEPLSGIRRTYQRRDLLNRIYASHEERQYAIDRARDLQSSLESRYPSFVKPMLQSHVTGGFWLGLPVQFCKTHLPLEDEMLTLVDEDDNEFQTKYLADKTGLSGGWRGFSIDHQLVDGDALVFQLTKPTEFKVYIIRAYNLEDREDTNEDSDVTQLEKSGKRNTKSSGHKSRANNSEDKGDNGEDSADVSQLEKSGKKTTKSSGRKSRANKSKDKADNGADLDVPELEKSGKRITRSSSKGKKLAKQKGFRHFPIRNGVSHGGPACSNPHSYLLLLQDTLIKALSTSAIRNDFSNFPPPPQQPSSSDPRHRQAQWGSPSQGSPSNQLKYRSQNQSPQPNPGFSLQGQSYTQPGNPNSWNPPNQSYPQYQNPSQANPQNFNYQQQRGPNQWNNQKQGYPQFGRPEQRNPQVENSNQLNNQAGIQRQGAQNQAPNALVSPIDELRRLCGEGKMKEAVELLKEGVKADADCFHLLFELCGKSKSFDNAKVVHDYFLQSTCRSDLQLNNKVLEMYGRCGSMSDARRVFDYMPDRNIDSWHFMMKGYADNGLGDEGLELFENMKQLGLQPDSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILGEPGHINEAFEYVKKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNKISTPPPKKRSAISMLDGKNRISEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6687545 6696392 + CrPI670011_02g009470.1 Cre02g0947 490228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0947 947 Gene3D Tetratricopeptide repeat domain 576 732 IPR011990 GO:0005515(InterPro)
Cre02g0947 947 SMART B3_2 184 275 IPR003340 GO:0003677(InterPro)
Cre02g0947 947 MobiDBLite consensus disorder prediction 427 548 - -
Cre02g0947 947 Pfam DYW family of nucleic acid deaminases 855 947 IPR032867 GO:0008270(InterPro)
Cre02g0947 947 MobiDBLite consensus disorder prediction 94 137 - -
Cre02g0947 947 Pfam B3 DNA binding domain 184 273 IPR003340 GO:0003677(InterPro)
Cre02g0947 947 MobiDBLite consensus disorder prediction 343 371 - -
Cre02g0947 947 PANTHER OS07G0578800 PROTEIN-RELATED 579 806 IPR045215 GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER)
Cre02g0947 947 MobiDBLite consensus disorder prediction 372 386 - -
Cre02g0947 947 SUPERFAMILY DNA-binding pseudobarrel domain 177 274 IPR015300 -
Cre02g0947 947 MobiDBLite consensus disorder prediction 442 548 - -
Cre02g0947 947 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 576 724 - -
Cre02g0947 947 Coils Coil 62 89 - -
Cre02g0947 947 NCBIfam pentatricopeptide repeat 670 703 IPR002885 -
Cre02g0947 947 ProSiteProfiles B3 DNA-binding domain profile. 184 275 IPR003340 GO:0003677(InterPro)
Cre02g0947 947 CDD B3_DNA 182 273 IPR003340 GO:0003677(InterPro)
Cre02g0947 947 Pfam PPR repeat family 667 714 IPR002885 -
Cre02g0947 947 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 667 701 IPR002885 -
Cre02g0947 947 Gene3D - 159 276 IPR015300 -
Cre02g0947 947 MobiDBLite consensus disorder prediction 281 392 - -
Cre02g0947 947 MobiDBLite consensus disorder prediction 307 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0947 Cre-Chr2:6687545 Cre04g2104 Cre-Chr4:38242463 4.40E-71 dispersed
Cre08g1520 Cre-Chr8:27891817 Cre02g0947 Cre-Chr2:6687545 1.10E-63 dispersed
Cre03g1354 Cre-Chr3:24374156 Cre02g0947 Cre-Chr2:6687545 1.40E-69 transposed
Cre07g1737 Cre-Chr7:32831837 Cre02g0947 Cre-Chr2:6687545 1.40E-123 transposed
Cre01g0640 Cre-Chr1:5818761 Cre02g0947 Cre-Chr2:6687545 2.20E-70 wgd
Cre02g0947 Cre-Chr2:6687545 Cre05g1174 Cre-Chr5:11310470 4.20E-33 wgd
Cre02g0947 Cre-Chr2:6687545 Cre08g1519 Cre-Chr8:27886123 6.00E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53120 PF14432 DYW_deaminase 6.70E-33 CL0109 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0947 - - - 0.0