Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0964 ATGCTCCTGCAACCAGAAGCTGCCATTCCTCAACCCATAACTTCGATGGTACCCACTCACGTCTCTGCTTCGACTCAAGGAGTTTCCGCGTCAGAAGGAGTCTCCACAGGCGCAAGCAGCAATGCCAGTGTGTCAAAAGTTACTACACAATGCTATCAACTTCTTGATAGGCAGTTTGCTCCAAATCAAGTTGGAAATCAGAACAATCGACGACCACAGTTTTCTGGAAGTTTTCCTGTAAATCAGAATACAATCTCTTCGATTCAGCCTTCAAATCAGGCTTTCGTGGCAGCTCATAATTCAAATCCACTTTGTATATACAAGAAATATGGAATATCACAAAACCCCAACTATTTATGCTTAGTTACCAACACCACGAATACTAGATCTGGAGAAGAGGGAGAAGAAGATCAGGGGCAAAAGAGTAATAACGCCCTATGTTACGAGGGCAAGATTGGAATAAAGCAACCTTCACCTCTTCGAGACTTTCTTCTTCTGCCTTTCTGCGTTGCTCTGCGGAATACGGGGGAAGAAGTACGTCATCGGCTCCGACGACCTTTAAACTGCCTTAGTTCGGCGACTCACGGTGGTCATTCGTGCCCTGGTTTACATCATCACCTAGCTATGGAGATTGCTCCGGCGGCTGCGCCTTCGATCGACAGAGATGCTGCCAACGATACCGCCTCTGTTGATGCAGTTCAAGCATCGTCTTCATCGCCGGATTCTGTACCAGGGAACGAGGCGAACTTGTCTACGTCTTTTCCTGGACCTAAGTATGATGACGATGAAGAGGAAGAGGACGTCTGCCGGATCTGTAGGAACCCTAGAGATGCGGATAACCCGCTAAGTTATCCCTGCGCTTGCAGCGGCAGCATCAAGTTTGTTCACCAGGATTGTCTCCTTCAATGGCTGAATCACAGCAACGCCCGTCAGTGCGAGGTTTGCAAACATGCATTTTCCTTCTCCCCTGTTTATGCCGAGAATGCTCCATCAAGGCTACCTTTTCAGGAATTTATTTTTGGAATAGCAATGAAAGCTTGCCATGTCCTGCAATTCTTTTTACGTCTAAGTTTTGTGCTCTCTGTTTGGCTCCTCATCATACCTTTCATTACATTTTGGATATGGCGTTTGGCTTTTGTGAGAAGTTTTGGGGAAGCTCAGAGATTATTCTTGAGTCACTTGTCTGCTACCGTTGTTCTTACTGATTGTCTTCATGGCTTCCTACTTTCTGCTAGCATTGTATTTATATTCCTTGGAGCTACCTCCTTGAGAGATTACTTCAGGCATTTACGGGAACTTGGAGGTCAGGATGGCGAGCGAGAAGATGATGCAGATCGAAATGGAGCTCGTGCTGTAAGAAGACCTCCGGGACAAGCTAATAGAAATTTTGCTGGTGACGCAAATGGTGAAGATGCGGGTGGAGCCCTAGTACTTGCTGGAGCAGGTCAAATGATTAGGAGGAATGCAGAAAATGTTGCTGCTCGATGGGAGATGCAGGCTGCTCGTCTTGAAGCTCACGTCGAACAGATGTTTGATGTGGATGATGCTGATGGTGCAGAAGATGTCCCCTTTGATGAGCTTGTTGGCATGCAGGGTCCTGTGTTTCACTTAGTTGAGAATGCATTCACAGTTTTAGCCAGCAATATGATATTTCTTGGTGTTGTTATCTTTGTGCCCTTTACACTAGGTCGGATTATACTTCATTACGTATCATGGCTTTTCTCTTCAGCCAGTGGTCCAGTTTTCTCAACAGTGATGCCACTTACAGAGTCAGCTCTCTCGTTGGCAAATATTACATTGAAAAATGCATTGACAGCTGTTGCAAATTTGTCATCAGATGGTAAAGAAAGTGGTCTACTTGATCAGGTTGCAGAAATGTTGGAAGTCAACTCCAGTATGCTAAACAATGTCTCAAACAACATAACGGCTCCACTTTCGGTTGATCTTTTGAAAGGGGCAGCCACTGGAGGTTCGAGGCTTTCTGATGTTACAACTCTTGCTGTAGGCTACATATTTATATTTTCTTTAGTTTTCTTCTATCTTGGGACTATTGCTTTGATTCGATACACACGAGGAGAGCCTTTGACTATGGGGAGGTTGTATGGCATTGCATCTGTAGCCGAGGCCATCCCTTCTCTCCTTAGGCAGTTCATGGCAGCAATGAGGCATTTGATGACCATGGTTAAGGTTGCTTTCCTATTGGTCATAGAACTTGGGGTATTCCCCTTGATGTGTGGTTGGTGGCTTGATATTTGTACTGTAAGGATGTTTGGAAAGTCAATGGCTCAGCGTGTTCAGTTCTTTTCAATTTCTCCTCTAGCAAGCTCATTGGTTCACTGGGCTGTTGGCATTGTATATATGCTACAAATAAGCATATTTGTCAATCTCCTCCGAGGGGTTTTGCGCAGTGGAGTTTTGTACTTTCTTCGCGATCCAGCTGACCCAAATTATAACCCTTTCCGAGATTTAATTGACGATCCTATGCACAAGCATGCTCGCAGGGTTCTTCTATCTGTCGCAGTGTATGGAAGTTTAATTGTAATGCTGGTGTTCTTACCTGTCAAACTTGCTATGAGGATGGTGCCCTCCATTTTTCCTCTTGATATATCGGTATCGGACCCCTTCACAGAGATTCCAGCTGACATGCTTCTGTTTCAAATCTGCATTCCTTTTGCTATCGAGCATTTTAAATTGAGAACAACAATCAAATCCCTTCTTCACTGCTGGTTTACTGTAGTCGGTTGGGCCCTTGGTTTAACAGATTATTTACTTCCCAGAACTGAAGAAAATGTTGGCCAGGAAAATGGGAATGGAGAGCCTGGGTTGCAAGAAGAACTGCAGGTGGTACACCTAGGTGGACAGGATCAGGCTTTGGTGGCTCATAATGCAGCTAACGACCCAAATCAAGTTCCTGCATCTGGAAACTTGAGTAATGAGGAGTATGATAACGAAGAGCAGACTGATTCAGAGAGGTATAGCTTTGCTCTCCGCATTGTCCTTTTGTTGGTTGTGGCATGGATGACTCTTCTTGTCTTCAACTCAGCATTGATAGTGGTACCAACTTCACTTGGACGGGCACTTTTCAATGCCATTCCGCTTCTTCCCATCACACATGGAATCAAGTGCAATGATATGTATGCTTTTGTCATCGGGAGCTACGTTATTTGGACAGCAATAGCTGGTGCCAGATATTCCATTGAATATGTCAGAGCAAGGAGGGTGACAGTTTTGTTGGGCCAGATATGGAAATGGTTTGCCATTGTCGTCAAGAGTTCTGCACTTCTGTCAATTTGGATCTTTCTCATTCCAGTATTGATTGGCTTGTTATTTGAGCTTCTGGTCATCGTGCCTATGCGAGTTCCGGTGGATGAAAGCCCAGTTTTCCTCTTGTATCAGGATTGGGCATTGGGCTTAATTTTTCTTAAGATATGGACTAGACTGGTAATGTTAGATCATATGATACCACTGGTGGATGACAGTTGGAGGGTAAAGTTTGAAAGAGTTAGAGAAGATGGCTTCTCCAGGCTGCAAGGACTCTGGGTTCTGCGGGAAATAGTTGTGCCAATTATAATGAAGTTACTGACAGCACTATGCGTACCATATGTACTAGCTAGAGGAGTATTTCCCGTATTTGGGTACCCGCTGATCGTCAACTCGGCTGTTTATCGATTTGCTTGGATTGGATGCCTTTGTGTTAGCATGTTGTATTTCTGTGCCAAGAGATTTCATGTTTGGTTCACCAACCTTCACAATTCCATTCGTGACGATCGTTATCTCATTGGTCGTCGACTCCATAACTTCGGTGAAGACTCCGAAGAGAAGCAAACCGATGTGGGGACTTCATCCGAGACACAAAATGCACATCTGCTGGGCACCGGCCATGCAGCAGTGGCTGGTGAAGGATTGCGGCTGAGACGTGTGGTTGGTAACTGA 3933 45.0 MLLQPEAAIPQPITSMVPTHVSASTQGVSASEGVSTGASSNASVSKVTTQCYQLLDRQFAPNQVGNQNNRRPQFSGSFPVNQNTISSIQPSNQAFVAAHNSNPLCIYKKYGISQNPNYLCLVTNTTNTRSGEEGEEDQGQKSNNALCYEGKIGIKQPSPLRDFLLLPFCVALRNTGEEVRHRLRRPLNCLSSATHGGHSCPGLHHHLAMEIAPAAAPSIDRDAANDTASVDAVQASSSSPDSVPGNEANLSTSFPGPKYDDDEEEEDVCRICRNPRDADNPLSYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPSRLPFQEFIFGIAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHLSATVVLTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQDGEREDDADRNGARAVRRPPGQANRNFAGDANGEDAGGALVLAGAGQMIRRNAENVAARWEMQAARLEAHVEQMFDVDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFTLGRIILHYVSWLFSSASGPVFSTVMPLTESALSLANITLKNALTAVANLSSDGKESGLLDQVAEMLEVNSSMLNNVSNNITAPLSVDLLKGAATGGSRLSDVTTLAVGYIFIFSLVFFYLGTIALIRYTRGEPLTMGRLYGIASVAEAIPSLLRQFMAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLDICTVRMFGKSMAQRVQFFSISPLASSLVHWAVGIVYMLQISIFVNLLRGVLRSGVLYFLRDPADPNYNPFRDLIDDPMHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMVPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLHCWFTVVGWALGLTDYLLPRTEENVGQENGNGEPGLQEELQVVHLGGQDQALVAHNAANDPNQVPASGNLSNEEYDNEEQTDSERYSFALRIVLLLVVAWMTLLVFNSALIVVPTSLGRALFNAIPLLPITHGIKCNDMYAFVIGSYVIWTAIAGARYSIEYVRARRVTVLLGQIWKWFAIVVKSSALLSIWIFLIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMIPLVDDSWRVKFERVREDGFSRLQGLWVLREIVVPIIMKLLTALCVPYVLARGVFPVFGYPLIVNSAVYRFAWIGCLCVSMLYFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEDSEEKQTDVGTSSETQNAHLLGTGHAAVAGEGLRLRRVVGN 1310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6948025 6958290 + CrPI670011_02g009640.1 Cre02g0964 490245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0964 1310 MobiDBLite consensus disorder prediction 229 253 - -
Cre02g0964 1310 FunFam Probable E3 ubiquitin ligase SUD1 255 327 - -
Cre02g0964 1310 SUPERFAMILY RING/U-box 263 319 - -
Cre02g0964 1310 ProSiteProfiles Zinc finger RING-type profile. 269 316 IPR001841 -
Cre02g0964 1310 ProSiteProfiles Zinc finger RING-CH-type profile. 261 322 IPR011016 GO:0008270(InterPro)
Cre02g0964 1310 PANTHER SSM4 PROTEIN 235 1277 - GO:0030176(PANTHER)|GO:0030433(PANTHER)
Cre02g0964 1310 MobiDBLite consensus disorder prediction 224 262 - -
Cre02g0964 1310 MobiDBLite consensus disorder prediction 965 984 - -
Cre02g0964 1310 SMART ringv_2 268 316 IPR011016 GO:0008270(InterPro)
Cre02g0964 1310 Pfam RING-variant domain 269 315 IPR011016 GO:0008270(InterPro)
Cre02g0964 1310 MobiDBLite consensus disorder prediction 437 467 - -
Cre02g0964 1310 MobiDBLite consensus disorder prediction 965 980 - -
Cre02g0964 1310 Coils Coil 486 506 - -
Cre02g0964 1310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 327 IPR013083 -
Cre02g0964 1310 CDD RING_CH-C4HC3_MARCH6 268 317 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0964 K10661 - - csv:101222781 2101.25
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g385 . Blo15g00755 Bda06g01078 . Bpe07g00369 . . Bma12g00433 Cmo19g00615 Cmo11g01375 . . . . . Cpe04g00289 Cpe15g00481 Bhi05g01074 . . . . . . Cla02g00612 Cam02g0641 Cec02g0640 Cco02g0661 Clacu02g0645 Cmu02g0640 Cre02g0964 . . Cone3ag0981 Cone10ag1001 . Csa07g00748 . Cme01g00060 . . . . . . . . . . . Cma11g01740 Cma19g00597 . . . . . . . . . . . . . . . . . . . . Chy01g00063 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005956 2 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 2 1 1 39