Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0966 ATGGCCTCGATTTCCATTTCCACGCCCTACGTTCCCTCTGTTCTTCCTAATTCACGAGGGCTCCCGACGCAATTCCGGCTGACCAACGCCGGCGTCGGGCTTAATTCATCGCATTCAAGTCTGTTGCGGTCTCCGGCTGTCGTTTTGGCATTTTCCGGCTACCGTGTGGCCAGTTCTTCACCGTTTAGGAGTGGATCGTATACGGTTGGGGATTTCATGACGAAGAAGGGGAATCTGCAGGTTCTTAAACCTTCTACGAGTGTTGACGAAGCATTGGAGGTTCTGGTGGAGAAGAGTCTATCTGGATTTCCTGTTGTTGACGACGACTGGAAACTGGTTGGCGTTGTCTCAGATTATGATTTGTTAGCGTTGGACTCAATTTCAGGTGTGGGTGGTGGTGAGACTAATATATTTCCAGATGTCAACAGCAGCTGGAAAAGCTTCAAGTTGATACACAAATTGTTGAGCAAGAAGAATGGGGAAGTTGTAGGAGATTTAATGACACCTGCTCCATTGGTTGTTCGTGAAACCATGAACTTGGAAAATGCTGCCAGGCTGTTACTTGAAACAAAGTTCCATCGTTTACCGGTGGTAGATTGTGAAGGGAAGTTGGTGGGAATCGTCACAAGAGAAGACATAGTTAGAGCTGGTCTGCAGAAGAAGCGTACACATTCTAAAGAATTGATATGA 690 46.81 MASISISTPYVPSVLPNSRGLPTQFRLTNAGVGLNSSHSSLLRSPAVVLAFSGYRVASSSPFRSGSYTVGDFMTKKGNLQVLKPSTSVDEALEVLVEKSLSGFPVVDDDWKLVGVVSDYDLLALDSISGVGGGETNIFPDVNSSWKSFKLIHKLLSKKNGEVVGDLMTPAPLVVRETMNLENAARLLLETKFHRLPVVDCEGKLVGIVTREDIVRAGLQKKRTHSKELI 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6985778 6989759 + CrPI670011_02g009660.1 Cre02g0966 490247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0966 229 ProSiteProfiles CBS domain profile. 167 223 IPR000644 -
Cre02g0966 229 ProSiteProfiles CBS domain profile. 73 135 IPR000644 -
Cre02g0966 229 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX2, CHLOROPLASTIC 45 224 IPR051462 -
Cre02g0966 229 Pfam CBS domain 69 123 IPR000644 -
Cre02g0966 229 Pfam CBS domain 163 216 IPR000644 -
Cre02g0966 229 SMART cbs_1 170 218 IPR000644 -
Cre02g0966 229 SMART cbs_1 78 126 IPR000644 -
Cre02g0966 229 Gene3D - 64 224 IPR046342 -
Cre02g0966 229 SUPERFAMILY CBS-domain pair 61 216 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0966 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1149 Cre-Chr1:22791266 Cre02g0966 Cre-Chr2:6985778 1.40E-64 dispersed
Cre02g0966 Cre-Chr2:6985778 Cre05g1195 Cre-Chr5:11561222 6.60E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g383 Blo02g00825 . . . . . . . . Cmo11g01377 . . . . . Cpe04g00291 . Bhi05g01078 . . . . . . Cla02g00614 Cam02g0643 Cec02g0642 Cco02g0663 Clacu02g0647 Cmu02g0642 Cre02g0966 . . Cone3ag0986 Cone10ag1004 . Csa07g00746 . Cme01g00062 Blo04g00478 . . Bda14g00508 Bpe15g00904 . Bma03g00510 . . . . Cma11g01738 . . . Cpe14g00288 Cpe01g00430 . . . . . . . . . . . . . . . . Chy01g00065 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000579 5 3 4 3 4 3 5 3 3 3 3 3 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 3 8 2 106