Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0979 ATGGCGATTTCCCCTACTTTCTCCTTCCCCATCCTTGCTTTTCTTGCCCTCTTCCTCTGTTTTTCCCCATTTTCATCCGCTTCCCTTTCATCCACCTTCTCCATCATCGATGAAAATGCAAAACACCACCTGGGTATCCCCGAAATTGCCGATTCTGATGCCCAAGGATCCCCTCAACGGACCGACGCCGAGGTTGCGGCTCTGTACGAGTCCTGGTTGGTCCATCATGGAAAAGCCTACAACGCTCTCGGCGAGAAGGAGAGGCGGTTTGAGATTTTCAAGGATAATCTCAGGTTCATCGATGAACATAACCGGGAATCGCGGACGTATAAAGTTGGTTTGACCCGTTTCGCCGATCTCACCAATGAGGAGTATCGGGCAAAGTTTTTGGGTGGCCGAATCTCCCGGAAGCCTCGCCTATCTGCCGTCAAGAGCGGTAGATACGCGGCGACGCTCGGCGATGATCTTCCGGATCATGTCGATTGGAGAAAGAAGGGCGCTGTTGCGGCTGTTAAAGATCAAGGACAGTGTGGGAGCTGTTGGGCTTTCTCAACAGTTGCTGCAGTGGAAGGAATAAATCAAATCACCACCGGTGAATTGATCTCTCTGTCGGAGCAGGAACTTGTGGACTGTGACAAATCATATAACATGGGGTGCAATGGTGGTCTTATGGACTATGCTTTCCAGTTCATCATTGATAATGGTGGAATTGACACTGACGAAGATTACCCTTACAAGGGCCATGATGGTGCTTGTGATCCCAACCGGAAAAATGCCAAGGTTGTAACCATAGATGGATATGAAGATGTTCCTGAGAATGATGAGAGCTCCTTGAAAAAGGCTGTGGCAAGTCAACCAGTTAGTGTTGCCATTGAAGCTGGTGGCAGAGCCTTCCAACTTTACCAATCGGGTGTCTTCACTGGCCGTTGCGGAACCAATCTGGATCACGGTGTTGTCGCTGTTGGATATGGTACAGAAAATGGTACAGATTATTGGATTGTGAGGAATTCATGGGGTAAAAACTGGGGAGAGAGTGGTTATATCAGGTTGGAGAGAAATGTGGCCAATATTACCACAGGCAAGTGTGGTATAGCAGTAGAGCCTTCATACCCCATCAAAACCGGAATGAACCCTCCAAAACCTGCTGCTTCTCCACCATCTCCTGTCAAGCCCCCGACCGAATGTGATGACTACTTCTCATGCGAGGAAGGAACTACCTGCTGCTGTATCTATCAATATGGAAGCACCTGCTTTGGTTGGGGATGCTGCCCGCTTGAATCCGCAACCTGCTGCGATGACCATTACAGTTGCTGCCCCCATGAATATCCAATCTGCGACCTCGAGGCAGGAACTTGCCTAATGAGCAAAGGCAGCACGATGGGAGTCAAACTGCTGAAGCGCCTTCCTGCAAAACGTACAAGGGGCATTGAGAAGCTTGGGAAGTTGTTTGTTGGTGCTTGA 1461 49.49 MAISPTFSFPILAFLALFLCFSPFSSASLSSTFSIIDENAKHHLGIPEIADSDAQGSPQRTDAEVAALYESWLVHHGKAYNALGEKERRFEIFKDNLRFIDEHNRESRTYKVGLTRFADLTNEEYRAKFLGGRISRKPRLSAVKSGRYAATLGDDLPDHVDWRKKGAVAAVKDQGQCGSCWAFSTVAAVEGINQITTGELISLSEQELVDCDKSYNMGCNGGLMDYAFQFIIDNGGIDTDEDYPYKGHDGACDPNRKNAKVVTIDGYEDVPENDESSLKKAVASQPVSVAIEAGGRAFQLYQSGVFTGRCGTNLDHGVVAVGYGTENGTDYWIVRNSWGKNWGESGYIRLERNVANITTGKCGIAVEPSYPIKTGMNPPKPAASPPSPVKPPTECDDYFSCEEGTTCCCIYQYGSTCFGWGCCPLESATCCDDHYSCCPHEYPICDLEAGTCLMSKGSTMGVKLLKRLPAKRTRGIEKLGKLFVGA 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7179803 7182245 + CrPI670011_02g009790.1 Cre02g0979 490260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0979 486 SUPERFAMILY Granulin repeat 392 426 - -
Cre02g0979 486 CDD Peptidase_C1A 157 371 IPR039417 -
Cre02g0979 486 Pfam Cathepsin propeptide inhibitor domain (I29) 69 125 IPR013201 -
Cre02g0979 486 FunFam Cysteine protease 1 50 374 - -
Cre02g0979 486 Gene3D Cysteine proteinases 52 374 - -
Cre02g0979 486 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 174 185 IPR000169 -
Cre02g0979 486 SMART pept_c1 156 372 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cre02g0979 486 Gene3D Granulin 392 455 IPR037277 -
Cre02g0979 486 PRINTS Papain cysteine protease (C1) family signature 316 326 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cre02g0979 486 PRINTS Papain cysteine protease (C1) family signature 174 189 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cre02g0979 486 PRINTS Papain cysteine protease (C1) family signature 331 337 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cre02g0979 486 SUPERFAMILY Cysteine proteinases 61 372 IPR038765 -
Cre02g0979 486 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 314 324 IPR025660 -
Cre02g0979 486 SMART GRAN_2 395 452 IPR000118 -
Cre02g0979 486 SMART Inhibitor_I29_2 69 125 IPR013201 -
Cre02g0979 486 FunFam Cysteine protease 1 392 455 - -
Cre02g0979 486 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 62 369 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
Cre02g0979 486 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 331 350 IPR025661 -
Cre02g0979 486 Pfam Granulin 406 453 IPR000118 -
Cre02g0979 486 Pfam Papain family cysteine protease 156 372 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0979 K25900 - - csv:101222543 858.981
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0662 Cre-Chr2:3586468 Cre02g0979 Cre-Chr2:7179803 2.70E-103 dispersed
Cre02g0979 Cre-Chr2:7179803 Cre08g1415 Cre-Chr8:27127932 3.80E-111 dispersed
Cre11g1584 Cre-Chr11:25935052 Cre02g0979 Cre-Chr2:7179803 7.10E-80 transposed
Cre02g0979 Cre-Chr2:7179803 Cre04g1327 Cre-Chr4:32093615 3.60E-138 wgd
Cre02g0979 Cre-Chr2:7179803 Cre05g2206 Cre-Chr5:33774803 4.60E-141 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g328 . . . . . Bpe12g00163 . . . Cmo11g01384 Cma02g00311 Cma20g00695 Car02g00192 . . Cpe04g00295 . Bhi05g01087 . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . . . . Csa07g00228 . Cme01g00073 Blo04g00616 Blo13g00456 . . Bpe15g00768 . Bma03g00653 Bma08g00825 . Cmo02g00305 Cmo20g00687 . . . . . Cpe05g01328 . . . . . . . Cla02g01045 Cam02g1113 Cec02g1118 Cco02g1152 Clacu02g1099 Cmu02g1059 Cre02g1367 Lsi11g01321 . Chy01g00080 Cme11g01011
Vvi3g605 . . . . . Bpe12g00293 . . Cmo19g00605 . . . . . . Cpe04g00295 Cpe15g00476 . . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . Cone3ag0991 Cone10ag1012 Lsi03g00521 Csa07g00735 . Cme01g00073 . . Bda15g00848 Bda14g01450 . . Bma03g01355 Bma08g00518 . . . Cma11g01732 . Car11g01109 Car19g00445 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001585 7 2 1 3 5 2 3 1 2 1 1 1 2 2 2 1 0 5 4 2 2 2 2 2 2 1 2 5 3 3 71