Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0980 ATGACCCTTTCACCCATTCCTTCAAAACCACGGCGATTTTCAGTTTCTCCGCTCCAGCTCCCTCTCTCTGTTCCTTCCTCCCACCTTCGAAACCCTAAATCCACATCTCTCCTTGAAAATTTCGCACCCTTTTGTCGCCTTGGATTGTTCGGCTATCGTTGTTTTTTTTCTGGTCATATAATGGATCCAAATTCTACTGATTCCTCAACATCACCTACTGTTAATTCCTCGGAAACTAAACCACCAGAAGTACAGCCTCAGGCTCCTGCTACCACTGGAATGGATAATGTAACCCGTGATGCACCGTCTAAGCTATCTCCTAGTGGCATAACTTCATGGGCCAAAAACTTGAAAATTTCTCAACCACAGTCAGCTTCACAAGATGGAACGACTGATAATGCTGCTGGGAAGTCAGCTTTTGCACGTTTTACTAGTGGCTTAGGTTTGAACTTATCTCCAAAATCTGCTGCTTCTAATGATTCCCCAGATGGAACTTCTAAACCTGCCCAACCCAGTTTTGTGGGATCAATTACAAGAGGATTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGTCATGTTGTCTCCCAAAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAATATCATTGCCATGGGTTTTCCTGCTGGTGACATGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATCAAGTTCTTTGAATCACATCACAAGGGAAAATACAAAGTATATAATCTTTGTTCCGAGAGGCTATATGATGCTTCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCAATTCAACTCATAATATCATTTTGCCAAAGTGCTTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACAGGCTTGATGATTTCCAGTCTTCTTCTGTTTCTGAAGTTCTTTCCAACCGCTGAAGAATCCATTGAATACTACAACCAGAGAAGGTGTTTTGATGGCAAAGGTCTGGTTTTACCAAGTCAGATTAGGTATGTCAAATATTTTGAGCGTATTCTAACATACTTCAATGGAGAAAATCCTCCCAGTCGCAGATGTGTGCTTAGAGGGTTTCGTCTCCACAGATGCCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCCACTAAAGTACATCCAAGAACCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGATAATGGTCTTTGCCTTGCCTGGGGAGCCTGGTCTAGCTGAGTTATGTGGGGACTTCAAGGTTCATTTCCACGACCGCCAAGGAGATTTCTATTGTTGGCTAAACACAACCATGACCGAAAATCGGAAAATGCTGTACACGAATGATCTTGATGGGTTTGACAAGAGGAAACTACCTTCCCCCGGATTTCAGGTGGAGGTTGTTCTAGTTGATACGTCGCCCAACATGGACAATACTACCAAGAAGTCGGATGAAAGCTCAGGCTCAAGACCTTCTGCAGCTGATGGAAGTGAAGTTTCTGAGAACCAAAACAGAAAATCAGGACCTAATGATAGAGATGATGTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGCAAGGAGGAGGCAACTTCAGGTTCAGGGAATGATGGATCAGCTGTCAAGCCAGCATCTAAATCTCAAACAAGTACGACTTCATCAGATGATGTTGCGAGTTTAACACATGCAACAAAGCAAGTTTCCCTGGGAGATGGTGGAGCTAAACAGACTGCTCCTCCCAGTGATCGAAAAGGCGATGGAGCTGGAAGATCTGATTCTCTCCCAGAAGTTCCAAACTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGCGACGACGAAGACTATGAGAAGAAGAGAGATGCAAAGTTGAAAAGTTCGTGGAATGGCAGACGCGGCATCGGCAATATAATTGCGAAAGAGAAGTTTCTGGGGATTCAATTTCTTCGCCCTTTACTCCCAACCATTTCTCAGTTTTTGTTTTGTGGGTTGTGCTCGAAATATTCTATTCTGGTTGGTTCCCTTCAGAAAAGGGGTCAACCTCTTGAAGTCACCGTTATTGGATGCACAAAGTTGAAAGATACGGAATGGATTTCAAGGCAGGATCCTTATGTGTGCCTTGAATATGGTAGTACAAAGTTTCGCACCACCACTTGCACAGATGGTGGAAGAAATCCCACATTCCAAGAGAAATTTGTGTTTTCTCTTATTGAAGGGCTGAGAGAGATTAATGTCACAGTTTGGAACAGCAATACAGTTACTTATGATGACTTCATTGGCAATGGAAAAATCCAATTGGCAAAAGTTCTAGCAGAAGGGTATGATGACAGTTCATGGTCACTTCAAACTAAAACTGGCAGACATGCTGGGGAAGTGCGACTGATATTACATTTTGCAAATGCCAATAGACCGTCGTCAAGTTTTGCGCCCTCGGCACCACCATTTCATGCACCTACTCCACCCCAAGTCCCTGCATATGCTACAATGCCACCGGCACACCCGACAGCCTACCCTCCTCCTAGTGCTACACCCTATGCATCATTTCAATCTCCCTATCCTTCTTACCCACCCAGCTCTGGAGCATATCAAACATCCATGTACTCCCCATATCCATCTGGGTATCCTCCCACATCGTACCCGCCGCCTCCCTCGGGTTATCCTCCCAGTCCCTACCCACCACCTCCACAAGCCTCACCCTTCTATCCTCCAGGTCCTTATCCTGGAGTTTATCCCCCACCACAGTATTGA 2910 44.19 MTLSPIPSKPRRFSVSPLQLPLSVPSSHLRNPKSTSLLENFAPFCRLGLFGYRCFFSGHIMDPNSTDSSTSPTVNSSETKPPEVQPQAPATTGMDNVTRDAPSKLSPSGITSWAKNLKISQPQSASQDGTTDNAAGKSAFARFTSGLGLNLSPKSAASNDSPDGTSKPAQPSFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFESHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPIQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLVLPSQIRYVKYFERILTYFNGENPPSRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKVHPRTKSLSPEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLVDTSPNMDNTTKKSDESSGSRPSAADGSEVSENQNRKSGPNDRDDVFSDSESEGGSSKSKEEATSGSGNDGSAVKPASKSQTSTTSSDDVASLTHATKQVSLGDGGAKQTAPPSDRKGDGAGRSDSLPEVPNSESEFKAMAADASVFTFGDDEDYEKKRDAKLKSSWNGRRGIGNIIAKEKFLGIQFLRPLLPTISQFLFCGLCSKYSILVGSLQKRGQPLEVTVIGCTKLKDTEWISRQDPYVCLEYGSTKFRTTTCTDGGRNPTFQEKFVFSLIEGLREINVTVWNSNTVTYDDFIGNGKIQLAKVLAEGYDDSSWSLQTKTGRHAGEVRLILHFANANRPSSSFAPSAPPFHAPTPPQVPAYATMPPAHPTAYPPPSATPYASFQSPYPSYPPSSGAYQTSMYSPYPSGYPPTSYPPPPSGYPPSPYPPPPQASPFYPPGPYPGVYPPPQY 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7185701 7197818 + CrPI670011_02g009800.1 Cre02g0980 490261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0980 969 MobiDBLite consensus disorder prediction 517 550 - -
Cre02g0980 969 ProSiteProfiles C2 domain profile. 720 834 IPR000008 -
Cre02g0980 969 MobiDBLite consensus disorder prediction 574 614 - -
Cre02g0980 969 MobiDBLite consensus disorder prediction 514 650 - -
Cre02g0980 969 Pfam PTEN2, C2 domain 392 518 - -
Cre02g0980 969 ProSiteProfiles C2 tensin-type domain profile. 391 518 IPR014020 -
Cre02g0980 969 MobiDBLite consensus disorder prediction 932 969 - -
Cre02g0980 969 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 190 387 - -
Cre02g0980 969 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 218 386 IPR029021 -
Cre02g0980 969 Gene3D C2 domain 734 854 IPR035892 -
Cre02g0980 969 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 192 607 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Cre02g0980 969 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 735 854 IPR035892 -
Cre02g0980 969 Pfam C2 domain 736 831 IPR000008 -
Cre02g0980 969 CDD PTP_PTEN 215 380 IPR045101 GO:0016791(InterPro)
Cre02g0980 969 MobiDBLite consensus disorder prediction 551 573 - -
Cre02g0980 969 ProSitePatterns Tyrosine specific protein phosphatases active site. 321 331 IPR016130 GO:0016311(InterPro)
Cre02g0980 969 MobiDBLite consensus disorder prediction 65 110 - -
Cre02g0980 969 SMART PTEN_C2_2 389 517 IPR014020 -
Cre02g0980 969 CDD C2 736 833 - -
Cre02g0980 969 MobiDBLite consensus disorder prediction 152 172 - -
Cre02g0980 969 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 319 358 IPR000387 GO:0016311(InterPro)
Cre02g0980 969 Gene3D Protein tyrosine phosphatase superfamily 190 387 IPR029021 -
Cre02g0980 969 ProSiteProfiles Phosphatase tensin-type domain profile. 205 384 IPR029023 -
Cre02g0980 969 SMART C2_3c 735 832 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0980 K01110 - - csv:101222304 1125.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1677 Cre-Chr10:30991356 Cre02g0980 Cre-Chr2:7185701 9.70E-41 transposed
Cre02g0980 Cre-Chr2:7185701 Cre04g1330 Cre-Chr4:32115620 1.40E-202 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g608 . . . . . Bpe12g00295 . . Cmo19g00604 Cmo11g01385 . . . . . Cpe04g00297 Cpe15g00474 . . . . . . . Cla02g00626 Cam02g0659 Cec02g0663 Cco02g0686 Clacu02g0667 . Cre02g0980 . . Cone3ag0993 Cone10ag1014 Lsi03g00523 Csa07g00733 . Cme01g00075 . . . . . . . . . . . Cma11g01729 Cma19g00586 Car11g01111 . . . . . . . . . . . . . . . . . . . Chy01g00081 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre04g1330 . 117 690 Protein tyrosine phosphatase (PTP) family AT3G50110 62.3 2.2e-191 666.0
Cre02g0980 . 102 671 Protein tyrosine phosphatase (PTP) family AT3G50110 58.4 1.1e-179 627.1
Cre10g1677 . 1 390 Protein tyrosine phosphatase (PTP) family AT5G39400 67.0 3.1e-154 542.0
Cre08g0753 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Cre08g0753 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 65.2 0.0e+00 1116.7
Cre06g2103 . 1 1258 Protein tyrosine phosphatase (PTP) family AT5G58160 55.9 0.0e+00 1090.9
Cre05g1800 . 1 1408 Protein tyrosine phosphatase (PTP) family AT5G58160 50.4 2.8e-299 1025.4
Cre09g0986 . 87 391 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 3.3e-122 435.3
Cre06g2686 . 125 1036 Protein tyrosine phosphatase (PTP) family AT5G23720 64.4 0.0e+00 1087.4
Cre06g1337 . 80 219 Protein tyrosine phosphatase (PTP) family AT3G06110 56.4 2.9e-42 168.7
Cre01g0393 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.4e-71 265.4
Cre05g2324 . 168 448 Protein tyrosine phosphatase (PTP) family AT3G52180 69.8 3.3e-115 411.8
Cre07g0876 . 10 256 Protein tyrosine phosphatase (PTP) family AT3G10940 68.7 6.9e-97 350.9
Cre10g1562 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.6 5.1e-203 704.1
Cre09g1063 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.2e-73 272.7
Cre03g1338 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.0 8.6e-54 207.6
Cre10g0493 . 71 403 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 3.2e-101 365.5
Cre11g0690 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.4e-80 297.0
Cre11g0690 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.4e-45 179.9
Cre10g0493 . 107 282 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.5e-43 171.0
Cre09g1063 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.6e-70 260.8
Cre03g1338 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 5.8e-58 221.1
Cre03g1338 . 7 196 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 4.0e-78 288.1
Cre07g0660 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 8.1e-63 239.2
Cre10g1677 . 1 390 Protein tyrosine phosphatase (PTP) family AT5G39400 67.0 3.1e-154 542.0
Cre02g0980 . 68 671 Protein tyrosine phosphatase (PTP) family AT3G19420 64.3 4.8e-220 761.1
Cre04g1330 . 117 690 Protein tyrosine phosphatase (PTP) family AT3G19420 61.0 9.4e-200 693.7
Cre04g1330 . 117 690 Protein tyrosine phosphatase (PTP) family AT3G50110 62.3 2.2e-191 666.0
Cre02g0980 . 102 671 Protein tyrosine phosphatase (PTP) family AT3G50110 58.4 1.1e-179 627.1
Cre06g2103 . 1 1258 Protein tyrosine phosphatase (PTP) family AT5G58160 55.9 0.0e+00 1090.9
Cre05g1800 . 1 1408 Protein tyrosine phosphatase (PTP) family AT5G58160 50.4 2.8e-299 1025.4
Cre08g0753 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Cre08g0753 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 65.2 0.0e+00 1116.7
Cre02g2507 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 65.0 1.5e-69 260.0
Cre10g0432 . 22 310 Protein tyrosine phosphatase (PTP) family AT2G35320 61.2 1.5e-100 363.2
Cre04g0825 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.5e-286 982.2
Cre04g0825 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.1e-258 888.6
Cre04g0825 . 86 672 Protein tyrosine phosphatase (PTP) family AT5G28210 56.2 1.3e-183 640.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83