Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g0988 ATGGCGGCGACAACCGATCCAGATCCGATCCAGACAAATCCAACACTCAATCCACCTCCAAACAAGCGGATCTTCATCCTCTCCGGCCAGAGCAACATGGCCGGACGCGGCGGCGTCTTAAAGAAGCCCCACCGGTGGGACGGCGTGGTCCCACCAGAAGCACAACCGCACCCGTCGATATTCCGGCTGAGCGCGAAGAAGCAATGGGAGGTGGCGCGTGAGCCACTCCACGCGGACATCGACGCAGAGAAGACGTGCGGGGTGGGCCCGGGTATGGTGTTTGCGAACGGAGTGAGAGAGCGGGTGGGGACGGTGGCGGTGGTGCCGTGCGCCGTCGGAGGAACGGCGATCAGAGAGTGGGCGCGTGGGGAGAAGCTGTATGAGGAAATGGTGAAGAGGGCGAGATATAGCGTGAAGGACGGCGGAGAAATTAGGGCCATTCTGTGGTTTCAAGGAGAAAGTGACACCTCTACTGAAAATGATGCTGATGCGTATCAGGGGAAGATGGAGGCGTTTGTTGCTAATGTGCGCCGGGATTTGGCTTTGCCTTCTCTCCCAATCATTCAGGTAGCACTGGCATCAGGATCCAAGTACATTGAAAAAGTAAGGGAGGCTCAATTGGGGATGAAAATGGAGAATTTGGTGTGTGTGGATGCAAAGGGATTGGAACTCCAAGAAGACAACCTCCATCTTACAACACATGCTCAGATTAAAAGGAGTACACGTGGCAATCTGGGTTTCCTCAAATGGCAAAATGGGGATGAAAACGGTAATCGTCAACTACTGGTATCCGTGTATTTGGCTTATTGGAGAAGAAGGGATAAGGAGCTTCAAGAAAGAACTCAGGAGTTTTCCGGCGCCAATCGAGCTCCTCAGATGGCCGTTCTTCAAGCTTCCGCCTCTCTCTCTCTCGCCACACGCGATGCTTCCTTCGCAAGAACAGCACCAAAAGTCTTTCCACTTCATAGAGGTCCCCTACCGAATTCATACCGACTTGGAACGACGTTCGCTACTGGCTCTCCACTTGTGTTAATAAGCAAGCCATCTGGTCAAAAGAAGCACGCACTCAAACAAAATTCTGTTTCTATAAGATGTGAACAAAGTACCCAACAGAGTAATCTGGATGTTTGGCTTGGGCGCTTTGCGATGGTAGGATTTGCTATTGCAATTAGTGTTGAAATAGCAACAGGCAAGGGACTTTTAGAGAATTTTGGAGTAACGTCTCCTCTGCCTAGTGTGGCCTTGGCAGTTACCGCATTGGCCTTTATTGCCTTCTGTCCCAAAGAATCAATTCTCTTTTTGCCTTTTCCTGTAGAAGTTTTTGGTCTAATATTCACTTGGAACACAAGCATGGGTGCAGTGATATCTAGGTTGAGGAAGCGACTCTTCCAGAACCGTGAAGTTAGAATCCTGATGGTTGGTCTTGATGCATCGGGGAAGACAACCATTTTGTACAAACTAAAACTTGGTGAAATTGTTATGACCGTACCAACTATTGGGTTCAATGTGGAAACAGTAGAATACAAAAACATGAGCTGCAGTGTTTGGGACGTTGGAGGACAGGATAAGATAAGGCCATTATGGAGACATTACTTCCAGAATACACAAGGACTTGTATTTGTTGTGGATAGCGGTGACAGAGAGAGAATCTGTGAAGCCCGTAATGAGTTGCATCGCATTCTCAGTGAGCCAGAGCTAAGGAATGCAGCTGTGCTTGTATTTGCCAATAAGCAAGATCTTCCACATTCAATGGCTGTCTCTGAAATTGCAACTAAACTTGGTCTCCACACACTCTCTCAAAGAAGATGGTACATACAAGGTACTTCTGCAACTTCTGGGCAAGGGCTTTATGAGGGTTTTGATTGGCTCTGCAGCAACATTACCATCAAAGACACTCCATGA 1902 48.63 MAATTDPDPIQTNPTLNPPPNKRIFILSGQSNMAGRGGVLKKPHRWDGVVPPEAQPHPSIFRLSAKKQWEVAREPLHADIDAEKTCGVGPGMVFANGVRERVGTVAVVPCAVGGTAIREWARGEKLYEEMVKRARYSVKDGGEIRAILWFQGESDTSTENDADAYQGKMEAFVANVRRDLALPSLPIIQVALASGSKYIEKVREAQLGMKMENLVCVDAKGLELQEDNLHLTTHAQIKRSTRGNLGFLKWQNGDENGNRQLLVSVYLAYWRRRDKELQERTQEFSGANRAPQMAVLQASASLSLATRDASFARTAPKVFPLHRGPLPNSYRLGTTFATGSPLVLISKPSGQKKHALKQNSVSIRCEQSTQQSNLDVWLGRFAMVGFAIAISVEIATGKGLLENFGVTSPLPSVALAVTALAFIAFCPKESILFLPFPVEVFGLIFTWNTSMGAVISRLRKRLFQNREVRILMVGLDASGKTTILYKLKLGEIVMTVPTIGFNVETVEYKNMSCSVWDVGGQDKIRPLWRHYFQNTQGLVFVVDSGDRERICEARNELHRILSEPELRNAAVLVFANKQDLPHSMAVSEIATKLGLHTLSQRRWYIQGTSATSGQGLYEGFDWLCSNITIKDTP 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7315354 7330829 - CrPI670011_02g009880.1 Cre02g0988 490269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g0988 633 MobiDBLite consensus disorder prediction 1 21 - -
Cre02g0988 633 Gene3D SGNH hydrolase 21 245 IPR036514 -
Cre02g0988 633 CDD Arf1_5_like 468 626 IPR045872 GO:0003924(InterPro)
Cre02g0988 633 NCBIfam small GTP-binding protein domain 466 604 IPR005225 GO:0005525(InterPro)
Cre02g0988 633 SUPERFAMILY Chlorophyll a-b binding protein 375 414 - -
Cre02g0988 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 464 627 IPR027417 -
Cre02g0988 633 PRINTS GTP-binding SAR1 protein signature 497 521 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g0988 633 PRINTS GTP-binding SAR1 protein signature 569 590 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g0988 633 PRINTS GTP-binding SAR1 protein signature 469 492 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g0988 633 PRINTS GTP-binding SAR1 protein signature 524 549 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g0988 633 SUPERFAMILY SGNH hydrolase 24 253 - -
Cre02g0988 633 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 15 239 IPR052940 -
Cre02g0988 633 ProSiteProfiles small GTPase Arf family profile. 461 627 - -
Cre02g0988 633 Pfam ADP-ribosylation factor family 459 627 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g0988 633 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 22 238 IPR005181 -
Cre02g0988 633 Gene3D - 454 632 IPR027417 -
Cre02g0988 633 SMART arf_sub_2 451 631 - -
Cre02g0988 633 SMART sar_sub_1 451 627 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g0988 633 FunFam ADP-ribosylation factor 1 451 631 - -
Cre02g0988 633 SMART rab_sub_5 468 630 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g0988 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0988 Cre-Chr2:7315354 Cre08g1743 Cre-Chr8:29636656 7.90E-77 dispersed
Cre02g0988 Cre-Chr2:7315354 Cre04g1333 Cre-Chr4:32142851 9.40E-78 wgd
Cre02g0988 Cre-Chr2:7315354 Cre05g2213 Cre-Chr5:33822030 5.50E-62 wgd
Cre02g0988 Cre-Chr2:7315354 Cre08g1561 Cre-Chr8:28250665 1.80E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g616 . . . Bda08g00771 . . . . Cmo19g00598 Cmo11g01390 . . . . . Cpe04g00302 Cpe15g00470 . . . . . . . Cla02g00632 . Cec02g0671 Cco02g0695 . . Cre02g0988 . Cone8ag1110 . . Lsi03g00528 Csa07g00726 . Cme01g00082 . . . . . . . . . . . Cma11g01725 Cma19g00582 Car11g01116 Car19g00444 . . . . . . . . . . . . . . . . . . Chy01g00087 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009277 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 34