Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1013 ATGGACCCGCCGGAGTACCACAAGCCATCCGTCCGAACGTCGAAGAAGCGCGACTCGGAGGAGCACTCTTTGCAACAGGCCACTGCCAACAAGAGACCCGTACTTGGCGAGATCACTAACTCATTGATCTTCAGTTCGAGCCAGTGCTCCTTTTCTGATCAGGAGATGACGGATAAGGATCTGGACAAAGAGGAACTACCTGAAGGAAGGTCTGCTGACCGTTCGGAGAAATCTGGCTCTGCATTTAGCATTTATAACCATCTTCGATCTCTGGAGATGGAATTACACGTGAAGTTACTGTCCAACAACATTGAAAAGGCTTACAATAGTGATTCCAGTTTAACTTTCACTCGTATGCGAGAAATTCTAGTGGATTGGTTAGTAGAGGTTGCTGAGGAATACAAGCTTGTGTCGGACACCCTATATCTCACCATATCACATATTGACAGATACCTATCCTGGCATGTTGTTGACAGAAGCAAGCTACAACTTCTTGGCGTTTGTTGCATGCTAATTGCATCGACGCATGAAGAGATCAGTCCTCCACATGTTGAAGACTTCTGCTATATAACAGATAATACTTATACCAAAGAACAGGTACTGAATATGGAGAGAGAAGTACGCAAATTCTTGACCTGTGAAGGCGCCCCCACGATAAAAGTTTTCCTCAGAATATATACAAAAGTTGCTTTAGAAAATTGGAAGGCTCAAGATTTGCAATTTGAGTTATTGAGTTGTTATCTCGCGGAGCTAAGTTTGTTAGATCACCGTTGTGTACATATCTTACCTTCAAAAGTCGCTGCATCAGCCATTTTTCTTTCTAGATTCACAATCCAACCAGAGAAACATCCTTGGTGTTTAGCACTACAACGTTACTCCGGTTACAGGCCATCTGAACTAAAGGAATGCATTCTTGCCATTCATGACTTGCAATTAAATAGAAAAGGAAGCTCTTTACTGGCAATCAGAGACAAGTACAAGCAGCATAAGTTCAAGTGTGTGGCCGAGTTATCTTCACCCTCAGAAATTCCTGCATATTATTTTGAGGACATTGATCAGCAATCATTCAACGGGTTCTTAAGAACTTAA 1089 42.52 MDPPEYHKPSVRTSKKRDSEEHSLQQATANKRPVLGEITNSLIFSSSQCSFSDQEMTDKDLDKEELPEGRSADRSEKSGSAFSIYNHLRSLEMELHVKLLSNNIEKAYNSDSSLTFTRMREILVDWLVEVAEEYKLVSDTLYLTISHIDRYLSWHVVDRSKLQLLGVCCMLIASTHEEISPPHVEDFCYITDNTYTKEQVLNMEREVRKFLTCEGAPTIKVFLRIYTKVALENWKAQDLQFELLSCYLAELSLLDHRCVHILPSKVAASAIFLSRFTIQPEKHPWCLALQRYSGYRPSELKECILAIHDLQLNRKGSSLLAIRDKYKQHKFKCVAELSSPSEIPAYYFEDIDQQSFNGFLRT 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7741902 7745061 - CrPI670011_02g010130.1 Cre02g1013 490294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1013 362 MobiDBLite consensus disorder prediction 1 31 - -
Cre02g1013 362 PANTHER CYCLINS 59 328 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cre02g1013 362 SMART Cyclin_C_2 217 340 IPR004367 -
Cre02g1013 362 MobiDBLite consensus disorder prediction 48 77 - -
Cre02g1013 362 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 288 362 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cre02g1013 362 SUPERFAMILY Cyclin-like 217 341 IPR036915 -
Cre02g1013 362 Gene3D - 97 215 - -
Cre02g1013 362 Pfam Cyclin, N-terminal domain 107 211 IPR006671 -
Cre02g1013 362 SUPERFAMILY Cyclin-like 84 212 IPR036915 -
Cre02g1013 362 SMART cyclin_7 221 309 IPR013763 -
Cre02g1013 362 SMART cyclin_7 125 209 IPR013763 -
Cre02g1013 362 MobiDBLite consensus disorder prediction 55 75 - -
Cre02g1013 362 Pfam Cyclin, C-terminal domain 217 339 IPR004367 -
Cre02g1013 362 PIRSF Cyclin_A_B_D_E 2 347 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cre02g1013 362 FunFam Cyclin A1 202 336 - -
Cre02g1013 362 Gene3D - 84 336 - -
Cre02g1013 362 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1013 Cre-Chr2:7741902 Cre09g0228 Cre-Chr9:2391492 4.30E-67 dispersed
Cre02g1013 Cre-Chr2:7741902 Cre05g2222 Cre-Chr5:33883535 5.90E-85 wgd
Cre02g1013 Cre-Chr2:7741902 Cre08g1567 Cre-Chr8:28289464 3.40E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1013 K06627 - csv:101213896 627.476