Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1031 ATGGAGCAACTCAATGGAAGCTTCACAGCTGATGATCAAGAAGAAGAAGCAACTTTCATGGCTCAATTACTCTTCAACACCACAAATTCCCCTGACCCTTTCATGGCTGCCCTTCCCTATGAAACACCTTCTTCTTCAACCTTTTATAGCCTTTCTCAACAGACTAGTAATGGAAGTTATTGCAGCCAATTATTATTCCCCACAACTGAAAATAATAATAATTATTATTATTCTTGCAATCCCATGAATAATAATAATAATAATAATAATAATAATTCTTCATTGGGTGAGCTTGGAGATTATTACAATAACAATGGTGGTAATTTCCACACTGAGGATTATGAGGACTCTATGAATCTAGAGGTGAGTGAGAATAATTTTCAGCCTTGTCTTGAAGAAGCTGACCATAACCACCTTGAGATCAATTGCAAGAAAAGATCAAGGGGAGGATTTGGGGATCATGTAGAGAAGCGGAGGAATGAGAGGCCAAAGAAAACTCAAAGGCTTATTACCTCAAGCAGCAACACTGAAGAAGATGGCAATGCTGGCCCTAGCAGACAAAGCACAAGCAACTATTGCTCGGAAGACGAATCCAACACCTCTCTCGATCGAAACGGAGGAGCTAATAACTCGAGATCGAGTCCGAATGGTCCTACCAAATCCCGAGCCAGCAGAGGCTCAGCCACAGATCCACAGAGCCTCTATGCAAGAAAAAGAAGAGAAAGAATCAATGAGAGGTTGAGAATCTTACAGAATCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTCCAAATCAAGCTATTAAGCTCTGATGATTTATGGATGTACGCTCCGATCGCTTACAACGGAATGGATATCGGACTTAATCCGACCACCCCGAAAACACCAAAAGAGAAAGAATTATGA 951 40.59 MEQLNGSFTADDQEEEATFMAQLLFNTTNSPDPFMAALPYETPSSSTFYSLSQQTSNGSYCSQLLFPTTENNNNYYYSCNPMNNNNNNNNNNSSLGELGDYYNNNGGNFHTEDYEDSMNLEVSENNFQPCLEEADHNHLEINCKKRSRGGFGDHVEKRRNERPKKTQRLITSSSNTEEDGNAGPSRQSTSNYCSEDESNTSLDRNGGANNSRSSPNGPTKSRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNPTTPKTPKEKEL 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8027448 8029619 + CrPI670011_02g010310.1 Cre02g1031 490312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1031 316 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 49 296 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cre02g1031 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 227 276 IPR011598 GO:0046983(InterPro)
Cre02g1031 316 Pfam Helix-loop-helix DNA-binding domain 237 277 IPR011598 GO:0046983(InterPro)
Cre02g1031 316 FunFam Basic helix-loop-helix transcription factor 228 285 - -
Cre02g1031 316 SMART finulus 233 282 IPR011598 GO:0046983(InterPro)
Cre02g1031 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 227 293 IPR036638 GO:0046983(InterPro)
Cre02g1031 316 CDD bHLH_AtIND_like 228 290 - -
Cre02g1031 316 MobiDBLite consensus disorder prediction 145 240 - -
Cre02g1031 316 MobiDBLite consensus disorder prediction 167 231 - -
Cre02g1031 316 Gene3D - 226 284 IPR036638 GO:0046983(InterPro)
Cre02g1031 316 MobiDBLite consensus disorder prediction 145 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1031 Cre-Chr2:8027448 Cre03g1159 Cre-Chr3:11919237 5.50E-18 dispersed
Cre10g1196 Cre-Chr10:24562922 Cre02g1031 Cre-Chr2:8027448 7.10E-46 wgd
Cre02g1031 Cre-Chr2:8027448 Cre05g2237 Cre-Chr5:33985444 8.90E-37 wgd
Cre02g1031 Cre-Chr2:8027448 Cre08g1586 Cre-Chr8:28404131 5.80E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53126 PF00010 HLH 1.20E-08 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1031 - - - 0.0