Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre02g1031 | ATGGAGCAACTCAATGGAAGCTTCACAGCTGATGATCAAGAAGAAGAAGCAACTTTCATGGCTCAATTACTCTTCAACACCACAAATTCCCCTGACCCTTTCATGGCTGCCCTTCCCTATGAAACACCTTCTTCTTCAACCTTTTATAGCCTTTCTCAACAGACTAGTAATGGAAGTTATTGCAGCCAATTATTATTCCCCACAACTGAAAATAATAATAATTATTATTATTCTTGCAATCCCATGAATAATAATAATAATAATAATAATAATAATTCTTCATTGGGTGAGCTTGGAGATTATTACAATAACAATGGTGGTAATTTCCACACTGAGGATTATGAGGACTCTATGAATCTAGAGGTGAGTGAGAATAATTTTCAGCCTTGTCTTGAAGAAGCTGACCATAACCACCTTGAGATCAATTGCAAGAAAAGATCAAGGGGAGGATTTGGGGATCATGTAGAGAAGCGGAGGAATGAGAGGCCAAAGAAAACTCAAAGGCTTATTACCTCAAGCAGCAACACTGAAGAAGATGGCAATGCTGGCCCTAGCAGACAAAGCACAAGCAACTATTGCTCGGAAGACGAATCCAACACCTCTCTCGATCGAAACGGAGGAGCTAATAACTCGAGATCGAGTCCGAATGGTCCTACCAAATCCCGAGCCAGCAGAGGCTCAGCCACAGATCCACAGAGCCTCTATGCAAGAAAAAGAAGAGAAAGAATCAATGAGAGGTTGAGAATCTTACAGAATCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTCCAAATCAAGCTATTAAGCTCTGATGATTTATGGATGTACGCTCCGATCGCTTACAACGGAATGGATATCGGACTTAATCCGACCACCCCGAAAACACCAAAAGAGAAAGAATTATGA | 951 | 40.59 | MEQLNGSFTADDQEEEATFMAQLLFNTTNSPDPFMAALPYETPSSSTFYSLSQQTSNGSYCSQLLFPTTENNNNYYYSCNPMNNNNNNNNNNSSLGELGDYYNNNGGNFHTEDYEDSMNLEVSENNFQPCLEEADHNHLEINCKKRSRGGFGDHVEKRRNERPKKTQRLITSSSNTEEDGNAGPSRQSTSNYCSEDESNTSLDRNGGANNSRSSPNGPTKSRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNPTTPKTPKEKEL | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8027448 | 8029619 | + | CrPI670011_02g010310.1 | Cre02g1031 | 490312 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre02g1031 | 316 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 49 | 296 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Cre02g1031 | 316 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 227 | 276 | IPR011598 | GO:0046983(InterPro) | |
Cre02g1031 | 316 | Pfam | Helix-loop-helix DNA-binding domain | 237 | 277 | IPR011598 | GO:0046983(InterPro) | |
Cre02g1031 | 316 | FunFam | Basic helix-loop-helix transcription factor | 228 | 285 | - | - | |
Cre02g1031 | 316 | SMART | finulus | 233 | 282 | IPR011598 | GO:0046983(InterPro) | |
Cre02g1031 | 316 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 227 | 293 | IPR036638 | GO:0046983(InterPro) | |
Cre02g1031 | 316 | CDD | bHLH_AtIND_like | 228 | 290 | - | - | |
Cre02g1031 | 316 | MobiDBLite | consensus disorder prediction | 145 | 240 | - | - | |
Cre02g1031 | 316 | MobiDBLite | consensus disorder prediction | 167 | 231 | - | - | |
Cre02g1031 | 316 | Gene3D | - | 226 | 284 | IPR036638 | GO:0046983(InterPro) | |
Cre02g1031 | 316 | MobiDBLite | consensus disorder prediction | 145 | 166 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g1031 | Cre-Chr2:8027448 | Cre03g1159 | Cre-Chr3:11919237 | 5.50E-18 | dispersed | |
Cre10g1196 | Cre-Chr10:24562922 | Cre02g1031 | Cre-Chr2:8027448 | 7.10E-46 | wgd | |
Cre02g1031 | Cre-Chr2:8027448 | Cre05g2237 | Cre-Chr5:33985444 | 8.90E-37 | wgd | |
Cre02g1031 | Cre-Chr2:8027448 | Cre08g1586 | Cre-Chr8:28404131 | 5.80E-36 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53126 | PF00010 | HLH | 1.20E-08 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre02g1031 | - | - | - | 0.0 |