Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1036 ATGACAAGAAGATATTGGAACATCCATTTGGAAGAGATGATGGAAGCAAGAGTTCGTCTTGGTCATGAAACGAGACTTCATAAGTTCAGGGACTTGAGAACAGAACAAAAGACGGGTCCGAGGGGAAGCTTCAGCTTCGAGACCTTGAGGAAAATGGAAAAGAAGGAAACTGCTGGCGATGCCGATCGTCCATGGCAGTCTTACCACACTGTCTACACCAATGCAAAAGCCGGTATGGAAGGAGTTGACAAGGAGAAAGTGCAAAAAATTGTATATGAAATGAGTAAAGGGTCAAAATATTTTGAAAATGAGGAGCGGAAAGAGGCCGCCATCAGAGAAAAGATTGAGAGGATGCGAGCTAGGTGTGCACAGCTTACTGCAACGGATCTTTCTCAGTATCAAAAGGTTGCAGATAAAAGAATTTTGGAGCTGGAAAGTACACGTGATCTGTCAAGGATATGGTTGCATGTAGATATGGATGCTTTCTATGCCGCTGTTGAAACTTTAAGCAATCCTTTATTAAAGGGCAAGCCGATGGCTGTTGGTAACATGTCTATGCTTTCTACTGCTAACTATGAGGCTCGAAAGTATGGTGTTCGTGCTGCTATGCCTGGTTTTATTGCACGTAGATTATGTCCAGAGTTAATTTTTGTTCCCACGGATTTCGAAAAGTATAACTATTACAGTGATTTAACTAGAAAAGTATTTCATAGGTATGATCCCAACTTCTTGGCTGCTAGTCTGGATGAAGCTTACCTCGATATAACTGAAGTCTGCAAAGAAAGAGGCCTTACAAGTGAAGAAATTGCTAAGGATCTCAGAACCAGTATTTATGAAGAGACTGGTCTTACGTGTAGTGCTGGGGTTGCTGCCAACCGACTGCTTGCCAAGGTTTGCTCTGATATTAACAAACCAAATGGACAGTTCATTTTACCAAATGACCGAAGAGCTATTGTTACATTCATATCATCACTACCCATAAGAAAGATTGGTGGGATTGGAAAGGTCACTGAACATATCTTAAAGGGTGCTTTGGGGATTAATACATGTGAGGACATGCTACTAAAGGGTGGTCACCTCTGTGCGTTGTTTTCTCAATCCTCAGCAGATTATTTCTTGTCGGTTGGGCTTGGCCTTGGGAGCACCGATACTCCACAGGTTAGATTGCGAAAGAGTATCAGCAATGAAAGAACTTTTGCAGCCACCACTGATGAAAGATTAATTTTTCAGAAACTTGCTGACCTTGCGGAGATGCTGTCAATGGACATGGACAAGGAAGGTCTAACTGGGCGGACACTGACTCTTAAACTAAAAACTGCATCCTTTGAGGTTAGAACCAGAGCTGTAACTTTGCAAAAATACATTTGCTCCAGCAGTGACATTTTGCAACATGCATCAAGGCTACTAAAGGCTGAACTGCCCATTTCGCTAAGACTAATTGGGCTGCGGATATCTCACTTCAATGAAGATGGAGCTGTTGCTGGGTCTGATCCGACCCAAACATCCATTACTAGATTTATTACATCAGGAGATGCTTCTAGAAAGATTATGGGTGATTGTTTCTCCTTGAATCATGATTCTAACAATCATGCTATCCTGGATGATGCCGAAATTGATGTATGCATCAATGGTACTGATTCTGAAACACACCATCAAGATAGTAGTGATCAAAGAATCGACAACAATTTCTCGAATATGGATGACAGCAACTGTACGTCCAGCAATGACGCTGAGAAGTTGGAGAAACTTAAGAACCTTTTGAGCAACGTCAGCACTGATCAGGCCAATATTTTTAATACAGTAGGAAGCACCTCAGATTCCTTGGACGCTTTAGTCCCTCGAGTCTCGAGCACAGCATGTGCTTCATCAATAAACCTTGAAGGCAATCCCAAGAATAATGTGGATACCGAAAATCAGTTCGAGGTAAGATCACCAGATAACAATGGACAGATTTGGTGGATAGATGACTACAAATGTACAATCTGTGGTGCTGAAGTACCAGTGAGTTTCGTCGATGAAAGACAAGAGCACATAGATTTCCACATTGCGGAAAAACTTCAGGAAGAAGAATCTGGCATTCGTTCAAGAACCCTTACGCCCAGGAAAAGGACTCCTGACAAGAATCTACTGTCAAGTCAAAGGAAGCACAAAAAGCAAAAGTCAACTCCAAAGAAAGAGGAGCCTGATCGAGTCTACCAACTGCAACAGTCGAAACAAGTGGAGATGACATTGAACTCTAACCTCCAACATTATCCTCCTATGCATAGGGGACAAAGCAAAACAAAAACAAGGGAAAACAATCATTCATCAATGTCAATGTGCATCGTTAATTTGATGTCGGTTCTTTCTAGATTTGATAATGAGACATGA 2370 41.81 MTRRYWNIHLEEMMEARVRLGHETRLHKFRDLRTEQKTGPRGSFSFETLRKMEKKETAGDADRPWQSYHTVYTNAKAGMEGVDKEKVQKIVYEMSKGSKYFENEERKEAAIREKIERMRARCAQLTATDLSQYQKVADKRILELESTRDLSRIWLHVDMDAFYAAVETLSNPLLKGKPMAVGNMSMLSTANYEARKYGVRAAMPGFIARRLCPELIFVPTDFEKYNYYSDLTRKVFHRYDPNFLAASLDEAYLDITEVCKERGLTSEEIAKDLRTSIYEETGLTCSAGVAANRLLAKVCSDINKPNGQFILPNDRRAIVTFISSLPIRKIGGIGKVTEHILKGALGINTCEDMLLKGGHLCALFSQSSADYFLSVGLGLGSTDTPQVRLRKSISNERTFAATTDERLIFQKLADLAEMLSMDMDKEGLTGRTLTLKLKTASFEVRTRAVTLQKYICSSSDILQHASRLLKAELPISLRLIGLRISHFNEDGAVAGSDPTQTSITRFITSGDASRKIMGDCFSLNHDSNNHAILDDAEIDVCINGTDSETHHQDSSDQRIDNNFSNMDDSNCTSSNDAEKLEKLKNLLSNVSTDQANIFNTVGSTSDSLDALVPRVSSTACASSINLEGNPKNNVDTENQFEVRSPDNNGQIWWIDDYKCTICGAEVPVSFVDERQEHIDFHIAEKLQEEESGIRSRTLTPRKRTPDKNLLSSQRKHKKQKSTPKKEEPDRVYQLQQSKQVEMTLNSNLQHYPPMHRGQSKTKTRENNHSSMSMCIVNLMSVLSRFDNET 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8081849 8094078 - CrPI670011_02g010360.1 Cre02g1036 490317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1036 789 FunFam DNA polymerase kappa subunit 214 309 - -
Cre02g1036 789 Hamap DNA polymerase IV [dinB]. 151 503 IPR022880 GO:0003887(InterPro)
Cre02g1036 789 Gene3D - 388 492 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
Cre02g1036 789 Pfam impB/mucB/samB family C-terminal domain 390 493 IPR017961 GO:0003684(InterPro)|GO:0006281(InterPro)
Cre02g1036 789 MobiDBLite consensus disorder prediction 691 712 - -
Cre02g1036 789 Gene3D - 159 309 IPR043128 -
Cre02g1036 789 MobiDBLite consensus disorder prediction 733 756 - -
Cre02g1036 789 FunFam DNA polymerase IV 387 493 - -
Cre02g1036 789 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 63 726 IPR050116 GO:0003887(PANTHER)|GO:0005634(PANTHER)|GO:0042276(PANTHER)
Cre02g1036 789 Gene3D - 72 158 - -
Cre02g1036 789 CDD PolY_Pol_IV_kappa 155 487 IPR022880 GO:0003887(InterPro)
Cre02g1036 789 FunFam Polymerase (DNA directed) kappa 164 216 - -
Cre02g1036 789 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 388 485 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
Cre02g1036 789 Pfam impB/mucB/samB family 157 301 IPR001126 GO:0006281(InterPro)
Cre02g1036 789 Gene3D - 310 383 - -
Cre02g1036 789 MobiDBLite consensus disorder prediction 691 768 - -
Cre02g1036 789 Pfam Ubiquitin-Binding Zinc Finger 655 689 IPR041298 -
Cre02g1036 789 Coils Coil 101 128 - -
Cre02g1036 789 MobiDBLite consensus disorder prediction 547 571 - -
Cre02g1036 789 FunFam DNA polymerase kappa subunit 71 161 - -
Cre02g1036 789 PIRSF DNA_pol_eta 146 268 - -
Cre02g1036 789 PIRSF DNA_pol_eta 264 403 - -
Cre02g1036 789 PIRSF DNA_pol_eta 48 135 - -
Cre02g1036 789 PIRSF DNA_pol_eta 381 738 - -
Cre02g1036 789 ProSiteProfiles Zinc finger UBZ3-type profile. 652 689 IPR041298 -
Cre02g1036 789 ProSiteProfiles UmuC domain profile. 154 334 IPR001126 GO:0006281(InterPro)
Cre02g1036 789 FunFam DNA polymerase kappa 259 383 - -
Cre02g1036 789 SUPERFAMILY DNA/RNA polymerases 128 382 IPR043502 -
Cre02g1036 789 Gene3D - 171 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1036 K03511 - - csv:101212452 1175.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1006 Cre-Chr2:7640594 Cre02g1036 Cre-Chr2:8081849 1.80E-32 dispersed
Cre02g1036 Cre-Chr2:8081849 Cre04g2181 Cre-Chr4:38955430 8.80E-25 dispersed
Cre05g1721 Cre-Chr5:28927577 Cre02g1036 Cre-Chr2:8081849 2.70E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g708 . . . . . . . . Cmo19g00564 . . . . . . . Cpe15g00437 . . . . . . . Cla02g00683 Cam02g0717 Cec02g0730 Cco02g0752 Clacu02g0726 Cmu02g0724 Cre02g1036 Cone12ag1043 Cone8ag1076 . . Lsi03g00577 Csa07g00682 . Cme01g00122 . . . . . . . . . . . . Cma19g00550 . Car19g00408 . . . . . . . . . . . . . . . . . . Chy01g00132 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011596 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30