Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1047 ATGCGGGGACAACATTCTCACCCACTGAAGTCGGGTCTAGCCGGACCCGATGAGGAAAACGAACCAGTTCGCTCGTATCTCCCTGGAATGAACGTCCCGTTAGGCGCCGGAATTCGGAAGAAGGGAACTGGAGTCCGACCATGGCTACTACTGGACTCCACCGGCGGAGCTCAGGTAGTTGAGGCCGGAAAACATGTGATTATGCGGCGGACCGGCCTGCCGGCGCGTGACCTTCGGATTCTCGATCCGTTGCTCTCGTACCCATCTACGATTCTTGGCCGTGAGAAAGCGATTGTGATCAATTTGGAGCACATCAAAGCAATTATCACTGCTCAAGATGTGTTCGTGTTGAATGCTAGGGATCCGTCTGTAACCCCCTTTGTAGAGGAGCTTCAGAGACGGGTATTGCGGCACCATCAAGCCACTAAGGCTTCTCAGGAGGGCGTTGGTGATGATTCTAATTGGAGAAATCTATATGACCTGGAGGAGCCTCGTTCAAGGACTCAAAGTCCTCCTAATTCATACCAAGGATTTCCACAGGCTGAAGAGGAGGAGGGGAAGGAAAACATGAAACAAAGTCTTGAAAATCGGGAGGGATTGAAGGTTCTTCCTTTTGAGTTTGTTGCTTTGGAGGCATGCCTTGAAGCTGCTTGCAGTTGCTTAGAAAGCGAAGCAGATACATTGGAGCTCGAAGCTCACCCAGCTTTGGATAAGCTGACTTCTAAGATTAGTACTCTCAATTTGGAACGGGTGCGTCAGATCAAAAGTCGATTGGTTGCAATAACTGGACGAGTTCAAAAGGTGCGGGACGAATTAGAACACTTGCTAGATGATGATGAGGATATGGCTGAGATGTACTTAACAGAAAAGATGGTTCAGCAACAACTTGAGAACTCTTCCACTTCCTCAATTCCTGAGAGAGATGAAATGGAAGATGACGATCAGCAGTCGGGCAAAGATGACAGTATTCCTGCTGAAATATCATTGGACGGTGGTGGAATTTCTGCTAATTATGAAGGCAATATGGATGCTTCCCAGGATCATTTGTTTGGTGCATCAAATGTGGGCAGGGACAGCCATGGGACCCGGACAAGCACTACCCATAGCGCTATAAGCAAACACCTCGATGTGGAGGAACTCGAGATGCTTTTGGAGGCATACTTTGTGCAAATTGATGGTACACTAAACAAACTTTCCACGCTGAGGGAGTATGTAGATGACACAGAAGATTACATCAACATAATGCTGGATGACAAACAGAATCATCTTCTACAAATGGGAGTAATGTTGACAACGGCAACCCTCGTCGTCAGCGCTTTTGTCGTGGTGGCAGGTATCTTCGGAATGAACATCCATATTGAACTGTTTGAACCTGAAAAAGCAGGCATGCCGGAGTTCCTATGGACTGTTGGTGGTGGTGCTACAGGAACCATCTTCTTGTATGTCATTGCCATTGCCTGGTGTAAGCACAAACGCTTGCTCGAGTAG 1488 47.85 MRGQHSHPLKSGLAGPDEENEPVRSYLPGMNVPLGAGIRKKGTGVRPWLLLDSTGGAQVVEAGKHVIMRRTGLPARDLRILDPLLSYPSTILGREKAIVINLEHIKAIITAQDVFVLNARDPSVTPFVEELQRRVLRHHQATKASQEGVGDDSNWRNLYDLEEPRSRTQSPPNSYQGFPQAEEEEGKENMKQSLENREGLKVLPFEFVALEACLEAACSCLESEADTLELEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKMVQQQLENSSTSSIPERDEMEDDDQQSGKDDSIPAEISLDGGGISANYEGNMDASQDHLFGASNVGRDSHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIHIELFEPEKAGMPEFLWTVGGGATGTIFLYVIAIAWCKHKRLLE 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8353547 8358171 - CrPI670011_02g010470.1 Cre02g1047 490328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1047 495 Coils Coil 211 231 - -
Cre02g1047 495 Gene3D Magnesium transport protein CorA, transmembrane region 181 423 - -
Cre02g1047 495 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 36 493 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cre02g1047 495 MobiDBLite consensus disorder prediction 162 192 - -
Cre02g1047 495 FunFam Magnesium transporter MRS2-1 36 119 - -
Cre02g1047 495 MobiDBLite consensus disorder prediction 293 335 - -
Cre02g1047 495 Gene3D - 37 119 - -
Cre02g1047 495 Pfam Magnesium transporter MRS2-like 373 418 - -
Cre02g1047 495 Pfam Magnesium transporter MRS2-like 188 294 - -
Cre02g1047 495 Pfam Magnesium transporter MRS2-like 53 137 - -
Cre02g1047 495 CDD Mrs2_Mfm1p-like 48 493 IPR039204 -
Cre02g1047 495 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1047 Cre-Chr2:8353547 Cre10g1438 Cre-Chr10:28110223 9.20E-89 dispersed
Cre02g1047 Cre-Chr2:8353547 Cre06g1415 Cre-Chr6:8444609 7.30E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1047 - - - 0.0