Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1065 ATGGCATTTGCCAACATTCTCTCTGCCATTTGCTTGATGGGGCTAACCCTAACTCTAGCTTCCATTGCGCCCATCTTGGCCAATAGCTACCCTAAAAACTACATTGCTGCCCACAACGCCATCCGTGCGGAGGTGGGCGTCGAGCCCCTCCATTGGAATACAACTTTAGCTATATATGCTCAAAATTATGCCAACACAAAGATCACTACTTGTCAAATGGAGCACTCTGGAGGACCTTATGGCGAGAACCTAGCGGAGGGATACGAAATGATGACAGCAGAGACAGCAGTGAGTCTCTGGGCCGATGAGAAGAAACATTACGACTACAATTCTAATACATGTGTCAATGACTCTAGCCATTGCCTCCATTATACACAGTTGGTGTGGAGGAACACCAAATCTGTTGGTTGTGCCCAAGTTAAGTGCCAAAACAATTGGATTTTTCTTATATGCAACTATTATCTTCCTGGAAACTGTATAGGTCAACGTCCATATTAA 498 44.78 MAFANILSAICLMGLTLTLASIAPILANSYPKNYIAAHNAIRAEVGVEPLHWNTTLAIYAQNYANTKITTCQMEHSGGPYGENLAEGYEMMTAETAVSLWADEKKHYDYNSNTCVNDSSHCLHYTQLVWRNTKSVGCAQVKCQNNWIFLICNYYLPGNCIGQRPY 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8642611 8643108 - CrPI670011_02g010650.1 Cre02g1065 490346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1065 165 Pfam Cysteine-rich secretory protein family 36 153 IPR014044 -
Cre02g1065 165 CDD CAP_PR-1 31 165 - -
Cre02g1065 165 Gene3D CAP 29 165 IPR035940 -
Cre02g1065 165 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 32 161 IPR001283 GO:0005615(PANTHER)
Cre02g1065 165 FunFam CAP, cysteine-rich secretory protein, antigen 5 28 165 - -
Cre02g1065 165 SMART SCP_3 29 161 IPR014044 -
Cre02g1065 165 SUPERFAMILY PR-1-like 27 165 IPR035940 -
Cre02g1065 165 PRINTS Allergen V5/Tpx-1 family signature 96 109 IPR001283 -
Cre02g1065 165 PRINTS Allergen V5/Tpx-1 family signature 121 137 IPR001283 -
Cre02g1065 165 PRINTS Allergen V5/Tpx-1 family signature 50 68 IPR001283 -
Cre02g1065 165 PRINTS Allergen V5/Tpx-1 family signature 148 161 IPR001283 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1065 K13449 - - csv:101210987 294.664
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1057 Cre-Chr2:8530419 Cre02g1065 Cre-Chr2:8642611 4.60E-78 dispersed
Cre02g1065 Cre-Chr2:8642611 Cre02g1067 Cre-Chr2:8699809 7.90E-53 dispersed
Cre02g1064 Cre-Chr2:8619905 Cre02g1065 Cre-Chr2:8642611 2.50E-55 tandem
Cre02g1065 Cre-Chr2:8642611 Cre02g1066 Cre-Chr2:8656930 5.00E-55 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g802 . . Bda06g01145 . . . . . Cmo19g00540 . . . . . . Cpe04g00339 Cpe15g00419 . . . . . . . Cla02g00713 Cam02g0763 Cec02g0761 Cco02g0787 Clacu02g0754 Cmu02g0748 Cre02g1065 . . . . Lsi03g00627 Csa07g00657 . Cme01g00145 . . . . . . . . Sed07g1155 . . Cma11g01688 . . . . . Bhi11g01091 Tan01g0594 Cmetu07g1308 . . . . . . . . . . . Lsi03g00997 . Chy01g00154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002300 0 1 0 0 0 16 0 4 4 0 1 3 1 1 1 2 2 0 1 3 1 1 0 3 1 10 1 2 4 0 63